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Phylogenetics
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#	Item
231	22 Genome Informatics 16(1): 22–Improvement in the Accuracy of Multiple Sequence Alignment Program MAFFT Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2005-12-28 10:55:26 Computational phylogenetics Bioinformatics Biology MAFFT Multiple sequence alignment MUSCLE Clustal Sequence alignment ProbCons BLAST BLOSUM Fast Fourier transform
232	December 15, :43 WSPC - Proceedings Trim Size: 9.75in x 6.5in Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2008-12-14 21:44:40 Bioinformatics Computational phylogenetics Molecular biology Genetics Gene expression Substitution model Models of DNA evolution Genetic code Sequence alignment Synonymous substitution Nonsynonymous substitution Mutation
233	Running SNAP The SNAP Team September, Introduction SNAP is a tool that is intended to serve as the read aligner in a gene sequencing pipeline. Its theory of Add to Reading List Source URL: snap.cs.berkeley.edu Language: English - Date: 2013-12-20 16:37:24 Bioinformatics Genetics Search algorithms Biology Public-domain software Computational phylogenetics DNA sequencing SAMtools Sequence alignment Hash function Hash table Human genome
234	MDL Method: an Inductive Inference Method for Reconstructing Phylogenetic Trees Fengrong Ren Add to Reading List Source URL: www.jsbi.org Language: English - Date: 1998-01-09 02:50:12 Computational phylogenetics Phylogenetics Algorithmic information theory Minimum description length Statistical theory Phylogenetic tree Maximum parsimony PHYLIP MDL Maximum likelihood estimation
235	Protein Structure Alignment Using a Graph Matching Technique Tatsuya Akutsu Department of Computer Science, Gunma University Add to Reading List Source URL: www.jsbi.org Language: English - Date: 1998-01-09 02:50:07 Bioinformatics Mathematics Statistics Computational phylogenetics Graph theory Root-mean-square deviation of atomic positions Dynamic programming Matching Bipartite graph Root-mean-square deviation Algorithm Structural alignment software
236	Syst. Biol. 46(l):101-lllAN ALTERNATING LEAST SQUARES APPROACH TO INFERRING PHYLOGENIES FROM PAIRWISE DISTANCES JOSEPH FELSENSTEIN Department of Genetics, University of Washington, Box, Seattle, Washington Add to Reading List Source URL: sysbio.oxfordjournals.org Language: English Computational phylogenetics Bioinformatics Phylogenetics Biology Statistics Mathematical optimization Least squares Regression analysis Neighbor joining PHYLIP Topology Maximum parsimony
237	August 4, :42 WSPC - Proceedings Trim Size: 9.75in x 6.5in Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2008-12-11 03:42:57 Computational phylogenetics Bioinformatics Biology Mathematical and theoretical biology Sequence alignment Multiple sequence alignment Structural alignment BLAST FASTA ESyPred3D HH-suite
238	Multiple sequence alignment by combining incomplete blocks of similar segments K. Suzuki Y. Akiyama Add to Reading List Source URL: www.jsbi.org Language: English - Date: 1998-01-09 02:50:16 Computational phylogenetics Bioinformatics Sequence alignment Multiple sequence alignment
239	438 Genome Informatics 13: 438–Weak Homology Detection by Profile-Profile Comparison Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-12-19 23:03:38 Bioinformatics Biology Protein structure Computational phylogenetics Computational science Protein methods BLAST Protein family Superfamily database PSIPRED Protein domain Protein superfamily
240	34 Genome Informatics 16(1): 34–A Gibbs Sampling Approach to Detection of Tree Motifs Lidio Marx Carvalho Meireles Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2005-12-28 10:55:28 Data types Knowledge representation Computational phylogenetics Frequent subtree mining B-tree Binary trees Tree Planted motif search

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