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Neighbor joining
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1	Estimating the Deviation From a Molecular Clock Luay Nakhleh , Usman Roshan , Lisa Vawter , and Tandy Warnow Add to Reading List Source URL: www.cs.rice.edu Language: English - Date: 2004-07-27 17:52:26 Computational phylogenetics Phylogenetics Biology Bioinformatics Ultrametric space Phylogenetic tree Neighbor joining Maximum parsimony Tree Distance matrices in phylogeny UPGMA
2	1 Disk Covering Methods: improving the accuracy and speed of large-scale phylogenetic analyses 1.1 Introduction : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : 1.2 Phylogenetic ana Add to Reading List Source URL: web.engr.illinois.edu Language: English - Date: 2014-08-30 15:58:30 Graph theory Phylogenetics Computational phylogenetics Maximum parsimony Chordal graph Disk-covering method Phylogenetic tree Neighbor joining Tree Tree decomposition Minimum spanning tree
3	Performance Study of Phylogenetic Methods: (Unweighted) Quartet Methods and Neighbor-Joining Katherine St. John Dept. of Math & Computer Science, Lehman College and the Graduate Center, City U. of New York E-mail: stjohn Add to Reading List Source URL: www.cs.unm.edu Language: English - Date: 2002-12-19 12:20:43 Phylogenetics Computational phylogenetics Unrooted binary tree Phylogenetic tree Split Maximum parsimony Neighbor joining Substitution model Models of DNA evolution Tree Binary tree
4	BIOINFORMATICS DISCOVERY NOTE Add to Reading List Source URL: www.cs.rice.edu Language: English - Date: 2004-07-27 17:52:20 Phylogenetics Computational phylogenetics Maximum parsimony Neighbor joining Phylogenetic tree Horizontal gene transfer NJ Split Quantitative comparative linguistics
5	FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin Presented by Arjun P. Athreya April 21, 2015 CS 598AGB Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2015-04-19 19:41:13 Phylogenetics Tree rearrangement Neighbor joining B-tree Tree T-tree Maximum likelihood estimation
6	A Comparison of Phylogenetic Reconstruction Methods on an IE Dataset Luay Nakhleh Tandy Warnow Dept. of Computer Science Add to Reading List Source URL: www.cs.utexas.edu Language: English - Date: 2006-09-05 17:00:19 Phylogenetics Computational phylogenetics Maximum parsimony Quantitative comparative linguistics Cladistics Graeco-Armenian Phylogenetic tree UPGMA Perfect phylogeny Neighbor joining Lexical Distance matrices in phylogeny
7	Theoretical Computer Science–118 www.elsevier.com/locate/tcs A few logs suce to build (almost) all trees: Part II Peter L. Erd˝osa;∗ , Michael A. Steelb , Laszlo A. Szekelyc , Add to Reading List Source URL: www.cs.utexas.edu Language: English - Date: 2000-08-25 17:14:05 Computational phylogenetics Neighbor joining Matrix Binary tree Tree Tree alignment Bayesian inference in phylogeny
8	Syst. Biol. 46(l):101-lllAN ALTERNATING LEAST SQUARES APPROACH TO INFERRING PHYLOGENIES FROM PAIRWISE DISTANCES JOSEPH FELSENSTEIN Department of Genetics, University of Washington, Box, Seattle, Washington Add to Reading List Source URL: sysbio.oxfordjournals.org Language: English Computational phylogenetics Bioinformatics Phylogenetics Biology Statistics Mathematical optimization Least squares Regression analysis Neighbor joining PHYLIP Topology Maximum parsimony
9	Construction of Phylogenetic Trees from Amino Acid Sequences using a Genetic Algorithm Hideo Matsuda Add to Reading List Source URL: www.jsbi.org Language: English - Date: 1998-01-09 02:50:08 Computational phylogenetics Phylogenetics Biology Bioinformatics Multiple sequence alignment Neighbor joining PHYLIP Maximum parsimony Sequence alignment Phylogenetic tree Substitution matrix UPGMA
10	On the Uniqueness of the Selection Criterion in Neighbor-Joining David Bryant February 1, 2005 Abstract The Neighbor-Joining (NJ) method of Saitou and Nei is the most widely used Add to Reading List Source URL: www.maths.otago.ac.nz Language: English - Date: 2013-03-04 14:55:23