Planted motif search

Results: 9



#Item
1Folklore / Motif / Suffix tree / Bioinformatics / Planted motif search / Formal languages / Lie groups

RISOTTO: Fast extraction of motifs with mismatches Nadia Pisanti‡ , Alexandra M. Carvalho◦∗, Laurent Marsan∓ and Marie-France Sagot ◦ INESC-ID, Lisbon INRIA Rhˆ

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Source URL: pbil.univ-lyon1.fr

Language: English - Date: 2008-10-22 02:35:23
2Mathematics / Mathematical analysis / Probability / Probability distributions / Bioinformatics / Circuit complexity / NC / Expected value / Net / Binomial distribution / Planted motif search

Vol. 18 noPages 1382–1390 BIOINFORMATICS Subtle motifs: defining the limits of motif finding

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Source URL: www.maths.usyd.edu.au

Language: English - Date: 2005-06-21 16:21:29
3Graph theory / Spanning tree / Chordal graph / Binary tree / Tree / Tree decomposition / Planted motif search

JOURNAL OF COMPUTATIONAL BIOLOGY Volume 6, Numbers 3/4, 1999 Mary Ann Liebert, Inc. Pp. 369– 386 Disk-Covering, a Fast-Converging Method

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Source URL: web.engr.illinois.edu

Language: English - Date: 2016-05-15 16:25:24
4Bioinformatics / Applied mathematics / Multiple sequence alignment / Pattern recognition / NC / Learning / Expectationmaximization algorithm / Artificial intelligence / Planted motif search

Vol. 18 noPages 1374–1381 BIOINFORMATICS Finding motifs in the twilight zone U. Keich ∗ and P. A. Pevzner

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Source URL: www.maths.usyd.edu.au

Language: English - Date: 2005-06-21 16:20:27
5Suffix tree / String searching algorithm / String / Generalized suffix tree / Trie / NP / Planted motif search

International Journal of Foundations of Computer Science c World Scientific Publishing Company ! A First Approach to Finding Common Motifs With Gaps COSTAS S. ILIOPOULOS∗

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Source URL: pbil.univ-lyon1.fr

Language: English - Date: 2008-10-22 02:35:22
6Bioinformatics / Sequence motif / DNA binding site / Algorithm / Motif / Multiple sequence alignment / Teiresias algorithm / NP / Planted motif search / Multiple EM for Motif Elicitation

Genome Informatics 15(2): 63–An Extension and Novel Solution to the (l,d )–Motif Challenge Problem

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Source URL: www.jsbi.org

Language: English - Date: 2004-12-26 23:38:46
7Gene expression / Networks / Bioinformatics / Suffix tree / Binary trees / Tree traversal / Gene regulatory network / R-tree / Rope / Algorithm / Planted motif search / Tree alignment

A highly scalable algorithm for the extraction of cis-regulatory regions Alexandra M. Carvalho∗ INESC-ID Rua Alves Redol, Lisboa, Portugal

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Source URL: pbil.univ-lyon1.fr

Language: English - Date: 2008-10-22 02:35:21
8Logic in computer science / FO / Finite model theory / Combinatory logic / Formal languages / Planted motif search

LNCSLongest Motifs with a Functionally Equivalent Central Block

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Source URL: pbil.univ-lyon1.fr

Language: English - Date: 2008-10-22 02:35:21
9Data types / Knowledge representation / Computational phylogenetics / Frequent subtree mining / B-tree / Binary trees / Tree / Planted motif search

34 Genome Informatics 16(1): 34–A Gibbs Sampling Approach to Detection of Tree Motifs Lidio Marx Carvalho Meireles

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Source URL: www.jsbi.org

Language: English - Date: 2005-12-28 10:55:28
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