T-Tree, a new tool for taxonomy-based phylogenetic co-evolution analysis Term Project for Biochemistry 218 Stanford University Fall 2007 Theodore C. Goldstein ABSTRACT Cladograms are dendrograms (tree-shaped diagrams) of

Source URL: biochem218.stanford.edu

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

Source URL: itol.embl.de

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Source URL: www.transbiomedicine.com

Pareto-Optimal Reconciliations SUPPLEMENT FOR “PARETO-OPTIMAL PHYLOGENETIC TREE RECONCILIATION”, BY RAN LIBESKIND-HADAS, YI-CHIEH WU, MUKUL S. BANSAL, AND MANOLIS KELLIS

Source URL: bioinformatics.oxfordjournals.org

Efficiently Finding the Most Parsimonious Phylogenetic Tree via Linear Programming Srinath Sridhar ? , Fumei Lam ??

Source URL: www.cs.cmu.edu

MorphoBank WORKSHOP REPORT AMERICAN MUSEUM OF NATURAL HISTORY, NOVEMBER 10 AND 11, 2001 Conveners: Maureen O’Leary, Janine Caira, Michael Novacek Supported by the National Science Foundation Divisions of Earth Sciences

Source URL: www.morphobank.org

• Biology
• Phylogenetics
• Evolutionary biology
• Philosophy of biology
• Phylogenetic tree
• Morphobank
• Systematics
• Cladistics
• GenBank

BMC Bioinformatics BioMed Central Open Access

Source URL: web.cbio.uct.ac.za

• Biology
• Computational phylogenetics
• Bioinformatics
• Genetics
• Molecular biology
• Phylogenetics
• Genetic recombination
• SplitsTree
• Phylogenetic tree
• Recombinant
• Sequence alignment
• HIV

1 An overview of phylogeny reconstruction 1.1 Introduction : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : 1.2 What are phylogenies used for in biological

Source URL: web.engr.illinois.edu

• Phylogenetics
• Biology
• Outgroup
• Computational phylogenetics
• Molecular phylogenetics
• Phylogenetic tree
• Systematics
• Phylogenetic network
• Species
• Most recent common ancestor
• Lineage
• Horizontal gene transfer

John Benjamins Publishing Company This is a contribution from Diachronica 30:2 © 2013. John Benjamins Publishing Company This electronic file may not be altered in any way. The author(s) of this article is/are permitte

Source URL: tandy.cs.illinois.edu

• Phylogenetics
• Computational phylogenetics
• Linguistics
• Biology
• Historical linguistics
• Academia
• Maximum parsimony
• Quantitative comparative linguistics
• Phylogenetic tree
• Character evolution
• Perfect phylogeny
• Luay Nakhleh

Evolutionary Ecology Research, 1999, 1: 895–909 A method for testing the assumption of phylogenetic independence in comparative data Ehab Abouheif* Department of Ecology and Evolution, State University of New York at

Source URL: biology.mcgill.ca

• Phylogenetics
• Statistics
• Regression analysis
• Time series analysis
• Covariance and correlation
• Autocorrelation
• Signal processing
• Phylogenetic tree
• Contrast
• Phylogenetic comparative methods