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PHYLIP
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#	Item
1	A Structural EM Algorithm for Phylogenetic Inference by Matan Ninio B.Sc., Hebrew UniversitySubmitted to the School of Computer Science & Engineering Add to Reading List Source URL: www.cs.huji.ac.il Language: English - Date: 2015-08-10 08:23:34 Computational phylogenetics Phylogenetics Biology Bioinformatics Estimation theory Statistics Phylogenetic tree Maximum parsimony Maximum likelihood estimation Tree Binary tree PHYLIP
2	Comparative Cladistics: Fossils, Morphological Data Partitions and Lost Branches in the Fossil Tree of Life Ross Callum Parker Mounce http://orcid.org2046 Add to Reading List Source URL: opus.bath.ac.uk Language: English - Date: 2015-03-19 06:31:20 Phylogenetics Computational phylogenetics Cladogram Maximum parsimony Phylogenetic tree Cladistics PHYLIP Postcrania
3	A Likelihood Model of Gene Family Evolution Lindsey Dubb A dissertation submitted in partial fulfillment Add to Reading List Source URL: evolution.genetics.washington.edu Language: English - Date: 2007-02-26 18:24:56 Phylogenetics Gene family Gene duplication Gene Phylogenetic tree PHYLIP
4	Evolution, 54(2), 2000, pp. 397–405 INDEPENDENT CONTRASTS SUCCEED WHERE ANCESTOR RECONSTRUCTION FAILS IN A KNOWN BACTERIOPHAGE PHYLOGENY TODD H. OAKLEY1 Add to Reading List Source URL: www.biology.ucr.edu Language: English - Date: 2004-05-14 16:15:44 Phylogenetics Biology Computational phylogenetics Maximum parsimony Long branch attraction Phylogenetic tree Cladistics Outgroup PHYLIP Character evolution Substitution model Evolution
5	Molecular Phylogenetic Analysis using both DNA and Amino Acid Sequence Data and Its Parallelization Hideo Matsuda, Hiroshi Yamashita Add to Reading List Source URL: www.jsbi.org Language: English - Date: 1998-01-09 02:49:53 Biology Computational phylogenetics Phylogenetics Bioinformatics Genetics Nucleic acids Molecular phylogenetics PHYLIP Sequence alignment Phylogenetic tree Lineage Nucleic acid sequence
6	The Troubled Growth of Statistical Phylogenetics Add to Reading List Source URL: sysbio.oxfordjournals.org Language: English Biology Phylogenetics Biological classification Computational phylogenetics Evolutionary biology Philosophy of biology Systematics PHYLIP Maximum parsimony Phenetics Cladistics Phylogenetic tree
7	MDL Method: an Inductive Inference Method for Reconstructing Phylogenetic Trees Fengrong Ren Add to Reading List Source URL: www.jsbi.org Language: English - Date: 1998-01-09 02:50:12 Computational phylogenetics Phylogenetics Algorithmic information theory Minimum description length Statistical theory Phylogenetic tree Maximum parsimony PHYLIP MDL Maximum likelihood estimation
8	Syst. Biol. 46(l):101-lllAN ALTERNATING LEAST SQUARES APPROACH TO INFERRING PHYLOGENIES FROM PAIRWISE DISTANCES JOSEPH FELSENSTEIN Department of Genetics, University of Washington, Box, Seattle, Washington Add to Reading List Source URL: sysbio.oxfordjournals.org Language: English Computational phylogenetics Bioinformatics Phylogenetics Biology Statistics Mathematical optimization Least squares Regression analysis Neighbor joining PHYLIP Topology Maximum parsimony
9	Construction of Phylogenetic Trees from Amino Acid Sequences using a Genetic Algorithm Hideo Matsuda Add to Reading List Source URL: www.jsbi.org Language: English - Date: 1998-01-09 02:50:08 Computational phylogenetics Phylogenetics Biology Bioinformatics Multiple sequence alignment Neighbor joining PHYLIP Maximum parsimony Sequence alignment Phylogenetic tree Substitution matrix UPGMA
10	PSODA: Better Tasting and Less Filling Than PAUP Hyrum Carroll Mark Ebbert Mark Clement and Quinn Snell Add to Reading List Source URL: www.biotconf.org Language: English - Date: 2014-05-21 17:42:43 Bioinformatics Genetics Maximum parsimony PHYLIP Tree rearrangement PAUP Phylogenetic tree Phylo Nexus file Computational phylogenetics Science Phylogenetics