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#	Item
11	1 Large-scale multiple sequence alignment and phylogeny estimation Tandy Warnow1,∗ 1 Department of Computer Science, University of Texas at Austin, Austin, Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2014-08-30 16:01:16 Computational phylogenetics Bioinformatics Phylogenetics Multiple sequence alignment Sequence alignment Protein methods Phylogenetic tree Structural alignment Maximum parsimony Homology Protein superfamily Clustal
12	22 Genome Informatics 16(1): 22–Improvement in the Accuracy of Multiple Sequence Alignment Program MAFFT Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2005-12-28 10:55:26 Computational phylogenetics Bioinformatics Biology MAFFT Multiple sequence alignment MUSCLE Clustal Sequence alignment ProbCons BLAST BLOSUM Fast Fourier transform
13	Microsoft Word - manual.doc Add to Reading List Source URL: probcons.stanford.edu Language: English - Date: 2004-08-31 15:35:42 Bioinformatics Computational phylogenetics ProbCons Clustal Multiple sequence alignment Sequence alignment FASTA T-Coffee
14	Bioinformatics Advance Access published April 28, 2010 Parallelization of the MAFFT multiple sequence alignment program Kazutaka Katoh∗ and Hiroyuki Toh Computational Biology Research Center, National Institute of Adv Add to Reading List Source URL: bioinformatics.oxfordjournals.org Language: English Computational phylogenetics Bioinformatics Biology Mathematical and theoretical biology Software Multiple sequence alignment MAFFT BLAST Sequence alignment Clustal Structural alignment Alignment
15	PDF Document Add to Reading List Source URL: www.cs.utexas.edu Language: English - Date: 2014-03-26 11:58:59 Computational phylogenetics Bioinformatics Multiple sequence alignment Sequence alignment MUSCLE MAFFT Clustal Phylo HMMER T-Coffee
16	Nucleic Acids Research, 2007, Vol. 35, Web Server issue W675–W677 doi:nar/gkm267 eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities Add to Reading List Source URL: www.ncbi.nlm.nih.gov Language: English Biostatistics Sequence alignment Multiple sequence alignment MUSCLE Clustal MAFFT ProbCons Nucleic acid structure prediction Phylo Computational phylogenetics Bioinformatics Science
17	® MacVectorfor Mac OS X System Requirements Add to Reading List Source URL: www.macvector.com Language: English - Date: 2015-01-16 21:30:26 Software Computational science MacVector Phrap Clustal Sequence alignment Mac OS X Multiple sequence alignment BLAST Bioinformatics Science Computational phylogenetics
18	&20387,1/$%25$725<21/,1(%,2,1)20$7,&722/6 There are a number of useful molecular biology online tools which one can take advantage of. There are too numerous to list here and give examples of. Consequently, I wi Add to Reading List Source URL: trishul.sci.gu.edu.au Language: English* - Date: 2003-08-18 08:00:30 Sequence alignment BLAST FASTA Nucleic acid sequence GenBank Clustal Phylo PHYLIP FASTA format Science Computational phylogenetics Bioinformatics
19	Phylogena ManualSYSTEM REQUIREMENTS Add to Reading List Source URL: www.awi.de Language: English - Date: 2007-08-13 02:52:19 Software Clustal MAFFT T-Coffee Cygwin BLAST Sequence database PHYLIP FASTA Computational phylogenetics Bioinformatics Science
20	Published in Comput. Applic. Biosci. 12: , 1996 TREEVIEW: An application to display phylogenetic trees on personal computers Roderic D. M. Page Add to Reading List Source URL: taxonomy.zoology.gla.ac.uk Language: English - Date: 2007-07-24 12:41:08 Application software PAUP PHYLIP Clustal Tree view Microsoft Windows Microsoft Reader Computer file Computational phylogenetics Science Software

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