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Nucleic acid structure prediction
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#	Item
1	Genome Informatics 13: 123–Aligning Multiple Protein Sequences by Parallel Hybrid Genetic Algorithm Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-12-09 05:53:39 Bioinformatics Computational phylogenetics Biology Multiple sequence alignment Sequence alignment Sequence analysis BLOSUM Nucleic acid sequence Protein structure prediction Phylo T-Coffee Genetic algorithm
2	Genome Informatics 12: 184–A Mini-Greedy Algorithm for Faster Structural RNA Stem-Loop Search Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-01-17 03:51:05 Bioinformatics Biology Computational phylogenetics Genetics Sequence alignment Multiple sequence alignment Sequence analysis Nucleic acid sequence Dynamic programming Phylo Sequence motif Nucleic acid structure prediction
3	92 Genome Informatics 15(2): 92–IRIS: Intermolecular RNA Interaction Search Dmitri D. Pervouchine1,2 Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2004-12-17 02:48:37 RNA Non-coding RNA Pseudoknot Ribonuclease Nucleic acid structure prediction RyhB Nucleic acid structure Riboregulator Nucleic acid secondary structure Gene expression Nucleic acid sequence
4	Rna 3D structure Prediction Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2004-12-17 02:56:00 RNA DNA Protein biosynthesis Molecular biology Genetics Nucleic acid structure Sequence alignment Biomolecular structure Nucleic acid secondary structure Nucleic acid sequence Pseudoknot Ribosome
5	Published online 19 DecemberNucleic Acids Research, 2016, Vol. 44, No. 7 e63 doi: nar/gkv1479 SimRNA: a coarse-grained method for RNA folding Add to Reading List Source URL: www.ncbi.nlm.nih.gov Language: English RNA Nucleic acid tertiary structure Biomolecular structure Nucleic acid structure Homology modeling Nucleic acid secondary structure Root-mean-square deviation Protein structure prediction Gene expression Biomolecule Ribosome Tetraloop
6	SimRNAweb: a web server for RNA 3D structure modeling with optional restraints Add to Reading List Source URL: nar.oxfordjournals.org Language: English Biology RNA Genetics DNA Protein structure Biomolecules Molecular biology Nucleic acid structure prediction Homology modeling Biomolecular structure STING Nucleic acid tertiary structure
7	Prediction of Beta-Sheet Structures Using Stochastic Tree Grammars Hiroshi Mamitsuka Add to Reading List Source URL: www.jsbi.org Language: English - Date: 1998-01-09 02:49:49 Bioinformatics Biology Chemistry Applied mathematics Context-free grammar Stochastic context-free grammar Peptide sequence Protein structure prediction Amino acid Sequence alignment Nucleic acid sequence Protein secondary structure
8	12 Genome Informatics 16(2): 12–Knowledge-Based Prediction of DNA Atomic Structure from Nucleic Sequence Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2005-12-28 06:18:59 DNA Biology Helices Genetics Nucleic acids Biophysics Nucleic acid structure Nucleic acid double helix Protein structure
9	The Partition Function Variant of Sankoff ’s Algorithm Ivo L. Hofacker1 and Peter F. Stadler1,2 1 Institut f¨ Add to Reading List Source URL: www.bioinf.uni-leipzig.de Language: English - Date: 2004-01-30 07:21:50 Genetics Sequence alignment Dynamic programming Multiple sequence alignment Nucleic acid structure prediction T-Coffee Hidden Markov model Smith–Waterman algorithm Nucleic acid sequence Computational phylogenetics Bioinformatics Science
10	Nebel et al. Algorithms for Molecular Biology 2011, 6:24 http://www.almob.org/contentRESEARCH Open Access Add to Reading List Source URL: www.almob.org Language: English Science Bioinformatics Theoretical computer science Statistical natural language processing Stochastic context-free grammar Nucleic acid structure prediction Pseudoknot Combinatorics Biomolecular structure RNA Genetics Biology

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