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Sequence motif
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#	Item
1	Today’s Lecture • Dynamic programming to find highest weight paths • Weighted linked lists – Sequence graphs – WLLs for “motif clusters” Add to Reading List Source URL: bozeman.mbt.washington.edu Language: English - Date: 2018-01-26 13:49:37
2	Vol. 24 ECCB 2008, pages i160–i166 doi:bioinformatics/btn282 BIOINFORMATICS Efﬁcient representation and P-value computation for Add to Reading List Source URL: pbil.univ-lyon1.fr Language: English - Date: 2008-10-22 02:35:22 Statistics Probability Machine learning Markov models Statistical models Bioinformatics Estimation theory Graph theory Markov chain Dynamic programming Bayesian network Sequence motif
3	Genome Informatics 12: 184–A Mini-Greedy Algorithm for Faster Structural RNA Stem-Loop Search Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-01-17 03:51:05 Bioinformatics Biology Computational phylogenetics Genetics Sequence alignment Multiple sequence alignment Sequence analysis Nucleic acid sequence Dynamic programming Phylo Sequence motif Nucleic acid structure prediction
4	Vol. 18 noPages 1374–1381 BIOINFORMATICS Finding motifs in the twilight zone U. Keich ∗ and P. A. Pevzner Add to Reading List Source URL: www.maths.usyd.edu.au Language: English - Date: 2005-06-21 16:20:27 Bioinformatics Applied mathematics Multiple sequence alignment Pattern recognition NC Learning Expectationmaximization algorithm Artificial intelligence Planted motif search
5	Genome Informatics 15(2): 63–An Extension and Novel Solution to the (l,d )–Motif Challenge Problem Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2004-12-26 23:38:46 Bioinformatics Sequence motif DNA binding site Algorithm Motif Multiple sequence alignment Teiresias algorithm NP Planted motif search Multiple EM for Motif Elicitation
6	Genome Informatics 12: 83–Local Multiple Alignment of Numerical Sequences: Detection of Subtle Motifs from Protein Sequences and Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-01-17 03:51:05 Bioinformatics Multiple sequence alignment Sequence motif Gibbs sampling Sequence Josiah Willard Gibbs Nucleic acid sequence BLAST
7	Finding DNA Regulatory Motifs with Positiondependent Models HuihaiWu University of Surrey, Guildford, United Kingdom Email: Prudence W.H. Wong, Mark X. Caddick and Chris Sibthorp Add to Reading List Source URL: cgi.csc.liv.ac.uk Language: English - Date: 2013-07-03 10:32:55 Bioinformatics Position weight matrix Sequence motif Multiple sequence alignment DNA binding site Gibbs sampling Bayesian network Sequence alignment
8	Vol. 22 no, pages e393–e401 doi:bioinformatics/btl245 BIOINFORMATICS Apples to apples: improving the performance of motif finders Add to Reading List Source URL: www.maths.usyd.edu.au Language: English - Date: 2006-08-02 16:36:22 Bioinformatics Multiple sequence alignment DNA binding site Entropy Motif Phylo Multiple EM for Motif Elicitation
9	BIOINFORMATICS ORIGINAL PAPER Vol. 21 no, pages 3832–3839 doi:bioinformatics/bti628 Add to Reading List Source URL: www-stat.wharton.upenn.edu Language: English - Date: 2006-07-24 16:11:28 Bioinformatics Biology Genetics Biotechnology Ridge Cluster analysis Phylogenetic footprinting Sequence motif DNA binding site Hierarchical clustering Gene expression profiling K-means clustering
10	BIOINFORMATICS APPLICATIONS NOTE Vol. 21 no, pages 2909–2911 doi:bioinformatics/bti425 Sequence analysis Add to Reading List Source URL: www-stat.wharton.upenn.edu Language: English - Date: 2006-07-24 16:11:25 Bioinformatics Biology Multiple sequence alignment DNA binding site Sequence motif Sequence alignment Gene regulatory network Consensus sequence Sequence analysis ST motif MEME suite Phylogenetic footprinting