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Phylogenetic footprinting
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#	Item
1	Genome Informatics 13: 297–Prediction of Co-Regulated Genes in Eubacterial Genomes by Phylogenetic Footprinting Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-12-19 23:03:40 Biology Genetics Gene expression DNA Bioinformatics Phylogenetic footprinting SOS box DNA binding site Transcription factor Noncoding DNA Conserved sequence
2	Genome Informatics 13: 299–Development of an Efficient Method to Search Conserved Noncoding Sequences Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-12-19 23:03:34 Biology Genetics Gene expression DNA Molecular biology Noncoding DNA Conserved sequence Phylogenetic footprinting Regulatory sequence Gene Human genome
3	PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes Dongsheng Che1,2 , Guojun Li1 , Shane T. Jensen3 , Jun S. Liu4 , and Ying Xu1 1 Computational Systems Biology Laboratory, Add to Reading List Source URL: www-stat.wharton.upenn.edu Language: English - Date: 2008-08-30 09:43:43 Biology Gene expression Bioinformatics Genomics Operon Biological databases Phylogenetic footprinting Ridge DNA binding site Gene Conserved sequence Fis
4	BIOINFORMATICS ORIGINAL PAPER Vol. 21 no, pages 3832–3839 doi:bioinformatics/bti628 Add to Reading List Source URL: www-stat.wharton.upenn.edu Language: English - Date: 2006-07-24 16:11:28 Bioinformatics Biology Genetics Biotechnology Ridge Cluster analysis Phylogenetic footprinting Sequence motif DNA binding site Hierarchical clustering Gene expression profiling K-means clustering
5	BIOINFORMATICS APPLICATIONS NOTE Vol. 21 no, pages 2909–2911 doi:bioinformatics/bti425 Sequence analysis Add to Reading List Source URL: www-stat.wharton.upenn.edu Language: English - Date: 2006-07-24 16:11:25 Bioinformatics Biology Multiple sequence alignment DNA binding site Sequence motif Sequence alignment Gene regulatory network Consensus sequence Sequence analysis ST motif MEME suite Phylogenetic footprinting
6	BIOINFORMATICS ORIGINAL PAPER Vol. 22 no, pages 1577–1584 doi:bioinformatics/btl147 Add to Reading List Source URL: www-stat.wharton.upenn.edu Language: English - Date: 2006-07-24 16:35:54 Bioinformatics Biology Biotechnology Sequence motif DNA binding site Phylogenetic footprinting Sequence logo ST motif Meme Sequence alignment Consensus sequence Multiple EM for Motif Elicitation
7	Microsoft Word - 21-Hatanaka.doc Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2008-12-11 03:38:26 Biology Gene expression Biochemistry E2F TRANSFAC Promoter Cis-regulatory element Transcriptional regulation Regulatory sequence Transcription factor Gene regulatory network Phylogenetic footprinting
8	September 23, :26 WSPC - Proceedings Trim Size: 9.75in x 6.5in Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2008-01-08 02:21:12 Biology Gene expression Biochemistry Genetics DNA Transcription factors Bioinformatics RNA TRANSFAC Cis-regulatory module DNA binding site Phylogenetic footprinting
9	TRANSFAC® Promoter and miRNA Analysis of Gene Regulation TRANSFAC® is a knowledge base containing data on eukaryotic transcription factors and miRNAs, their experimentally proven binding sites, and regulated genes. Ba Add to Reading List Source URL: www.biobase-international.com Language: English - Date: 2015-01-02 13:48:14 Biology Gene expression Biochemistry Transcription factors DNA TRANSFAC Phylogenetic footprinting Biobase
10	September 23, :26 WSPC - Proceedings Trim Size: 9.75in x 6.5in Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2008-01-08 02:04:33 Biology Gene expression Phylogenetic footprinting DNA binding site Noncoding DNA Transcriptional regulation Prochlorococcus Transcription factor ENCODE Promoter Regulatory sequence Synechocystis

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