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Phylogenetics
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161	Multiple Sequence Alignment and Phylogenetic Reconstruction: Theory and Methods in Biological Data Analysis Gianluca Della Vedova Add to Reading List Source URL: www.statistica.unimib.it Language: English - Date: 2004-04-21 05:50:41 Bioinformatics Computational phylogenetics Phylogenetics Combinatorics Dynamic programming Sequence alignment Multiple sequence alignment Phylo Homology Shortest common supersequence problem Longest common subsequence problem Alignment-free sequence analysis
162	MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0 Koichiro Tamura,* Joel Dudley,* Masatoshi Nei,à and Sudhir Kumar§* Center for Evolutionary Functional Genomics, The Biodesign Institute, Ar Add to Reading List Source URL: www.megasoftware.net Language: English* - Date: 2016-01-11 15:52:39 Computational phylogenetics Bioinformatics Phylogenetics Markov models Masatoshi Nei Sequence alignment Substitution model Phylogenetic tree Models of DNA evolution Nucleic acid sequence MEGA Molecular Evolutionary Genetics Analysis Nucleotide diversity
163	High-Performance Algorithm Engineering for Computational Phylogenetics Bernard M.E. Moret1 , David A. Bader2 , and Tandy Warnow3 1 2 Add to Reading List Source URL: www.cs.unm.edu Language: English - Date: 2002-10-09 00:06:39 Phylogenetics Computational phylogenetics Analysis of algorithms Theoretical computer science Bioinformatics Genetic algorithm Algorithm engineering Algorithm Empirical algorithmics Cache-oblivious algorithm Phylogenetic tree Travelling salesman problem
164	Genome Informatics 12: 155–Bacterial Molecular Phylogeny Using Supertree Approach Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-01-17 03:51:05 Phylogenetics Genetics Bacteriology Archaea Evolutionary biology Supertree Horizontal gene transfer Computational phylogenetics Phylogenetic tree Lari Gene family Bacteria
165	Journal of Theoretical Biology–325 Contents lists available at ScienceDirect Journal of Theoretical Biology journal homepage: www.elsevier.com/locate/yjtbi Add to Reading List Source URL: www.michaelelliot.net Language: English - Date: 2016-07-21 07:44:54 Estimation theory Parametric statistics Regression analysis Phylogenetics Evolutionary biology Phylogenetic tree Linear regression Ancestral reconstruction Character evolution Maximum likelihood estimation Ordinary least squares Phylogenetic comparative methods
166	Search Algorithms for Biosequences Using Random Projection Jeremy Buhler A dissertation submitted in partial fulfillment of the requirements for the degree of Add to Reading List Source URL: www.cse.wustl.edu Language: English - Date: 2001-08-28 13:13:57 Bioinformatics Computational phylogenetics Multiple sequence alignment Nucleic acid sequence PRINTS SmithWaterman algorithm
167	JOURNAL OF COMPUTATIONAL BIOLOGY Volume 12, Number 6, 2005 © Mary Ann Liebert, Inc. Pp. 796–811 Reconstructing Reticulate Evolution in Species— Add to Reading List Source URL: www.cs.rice.edu Language: English - Date: 2008-02-12 09:02:55 Phylogenetic network Phylogenetics Reticulation Tree Schedule Reticulate evolution Skew heap
168	Molecular Ecology, 2941–2951 doi: j.1365-294Xx Population structure of the pumpkin fruit fly Bactrocera depressa (Tephritidae) in Korea and Japan: Pliocene Add to Reading List Source URL: www.bio.sdsu.edu Language: English - Date: 2003-10-22 11:36:50 Population genetics Molecular evolution Phylogenetics Genetic genealogy Haplotype Molecular phylogenetics Genetic variation Molecular clock
169	 1999 Oxford University Press Nucleic Acids Research, 1999, Vol. 27, No. 1 39–43 Add to Reading List Source URL: www.proteininformationresource.org Language: English - Date: 2005-11-21 12:41:46 Bioinformatics Biological databases Proteins Genomics Computational phylogenetics Protein Information Resource Superfamily database National Center for Biotechnology Information Sequence database Protein superfamily BLAST Sequence alignment
170	FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin Presented by Arjun P. Athreya April 21, 2015 CS 598AGB Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2015-04-19 19:41:13 Phylogenetics Tree rearrangement Neighbor joining B-tree Tree T-tree Maximum likelihood estimation

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