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SmithWaterman algorithm
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#	Item
1	September 14, :56 WSPC - Proceedings Trim Size: 9.75in x 6.5in Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2009-12-21 02:04:19 Bioinformatics Computational phylogenetics Biology Mathematical and theoretical biology HMMER Sequence alignment BLAST Sequence analysis FASTA Hidden Markov model SmithWaterman algorithm Homology modeling
2	CSE 584A Class 21 Jeremy Buhler April 11, 2016 1 Add to Reading List Source URL: classes.engineering.wustl.edu Language: English - Date: 2016-04-11 07:29:21 Computational phylogenetics Bioinformatics Biology Tree alignment BLAST SmithWaterman algorithm Multiple sequence alignment NeedlemanWunsch algorithm
3	Simple and Fast Inverse Alignment John Kececioglu and Eagu Kim Department of Computer Science, The University of Arizona, Tucson, AZ 85721, USA {kece, egkim}@cs.arizona.edu Add to Reading List Source URL: www.cs.arizona.edu Language: English - Date: 2006-04-28 03:36:43 Computational phylogenetics Mathematical optimization Operations research Mathematics Linear programming Bioinformatics Convex optimization Sequence alignment SmithWaterman algorithm Ellipsoid method Linear inequality Inequality
4	Pairwise Sequence Alignment with Gaps with GPU Thomas C. Carroll Jude-Thaddeus Ojiaku Prudence W.H. Wong Add to Reading List Source URL: cgi.csc.liv.ac.uk Language: English - Date: 2015-10-05 11:33:32 Computational phylogenetics Bioinformatics Biology Applied mathematics BLAST Sequence alignment SmithWaterman algorithm Speedup Parallel computing Dynamic programming General-purpose computing on graphics processing units Multiple sequence alignment
5	Visual Analysis of Entity Relationships in Global Terrorism Database Alex Godwin, Remco Chang, Robert Kosara, William Ribarsky University of North Carolina at Charlotte, Charlotte, NC ABSTRACT With the increase of terro Add to Reading List Source URL: kosara.net Language: English* - Date: 2015-10-05 00:14:13 Computational phylogenetics Bioinformatics Biology Dynamic programming Sequence alignment NeedlemanWunsch algorithm Gap penalty BLAST SmithWaterman algorithm Phylo Global Terrorism Database Alignment
6	CSE 584A Class 16 Jeremy Buhler March 23, 2016 More alignment basics Add to Reading List Source URL: classes.engineering.wustl.edu Language: English - Date: 2016-03-23 01:12:39 Computational phylogenetics Bioinformatics Biology Gap penalty NeedlemanWunsch algorithm SmithWaterman algorithm Sequence alignment BLAST Multiple sequence alignment
7	CSE 181 Project guidelines Add to Reading List Source URL: www.cs.bilkent.edu.tr Language: English - Date: 2012-11-14 09:49:54 Bioinformatics Computational phylogenetics Biology BLAST BLAT FASTA PatternHunter Homology SmithWaterman algorithm Heuristic Seed
8	CSE 181 Project guidelines Add to Reading List Source URL: www.cs.bilkent.edu.tr Language: English - Date: 2012-10-22 10:40:16 Computational phylogenetics Bioinformatics Dynamic programming Multiple sequence alignment SmithWaterman algorithm Matrices NeedlemanWunsch algorithm Probalign
9	CSE 584A Class 18 Jeremy Buhler March 30, 2016 1 Add to Reading List Source URL: classes.engineering.wustl.edu Language: English - Date: 2016-03-30 09:53:59 Computational phylogenetics Bioinformatics Dynamic programming FASTA BLAST SmithWaterman algorithm BLAT Matrix Regular expression Sequence Sequence alignment Multiple sequence alignment
10	Search Algorithms for Biosequences Using Random Projection Jeremy Buhler A dissertation submitted in partial fulfillment of the requirements for the degree of Add to Reading List Source URL: www.cse.wustl.edu Language: English - Date: 2001-08-28 13:13:57 Bioinformatics Computational phylogenetics Multiple sequence alignment Nucleic acid sequence PRINTS SmithWaterman algorithm

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