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Bayesian inference in phylogeny
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1	CS168: The Modern Algorithmic Toolbox Lecture #14: Markov Chain Monte Carlo Tim Roughgarden & Gregory Valiant∗ May 11, 2016 The previous lecture covered several tools for inferring properties of the distribution that u Add to Reading List Source URL: theory.stanford.edu Language: English - Date: 2016-06-04 09:49:43 Markov models Markov processes Stochastic processes Monte Carlo methods Statistical mechanics Markov chain Stochastic matrix Markov property Random walk Continuous-time Markov chain Bayesian inference in phylogeny
2	Theoretical Computer Science–118 www.elsevier.com/locate/tcs A few logs suce to build (almost) all trees: Part II Peter L. Erd˝osa;∗ , Michael A. Steelb , Laszlo A. Szekelyc , Add to Reading List Source URL: www.cs.utexas.edu Language: English - Date: 2000-08-25 17:14:05 Computational phylogenetics Neighbor joining Matrix Binary tree Tree Tree alignment Bayesian inference in phylogeny
3	Bayesian Model Averaging Using the k-best Bayesian Network Structures Jin Tian, Ru He and Lavanya Ram Department of Computer Science Iowa State University Ames, IA 50011 Add to Reading List Source URL: www.cs.iastate.edu Language: English - Date: 2010-06-14 14:21:41 Bayesian inference Markov chain Graphical model Marginal likelihood Estimation theory Prior probability Particle filter Bayesian inference in phylogeny Statistics Bayesian statistics Bayesian network
4	Part A Simulation and Statistical Programming HT 2015 Problem Sheet 3 due Week 7 Tuesday 10am 1. (a) Give a Metropolis-Hastings algorithm to sample according to the Gamma probability density function, p(x) ∝ xα−1 ex Add to Reading List Source URL: www.stats.ox.ac.uk Language: English - Date: 2015-02-23 13:52:48 Computational statistics Probability and statistics Markov models Markov processes Metropolis–Hastings algorithm Markov chain Gibbs sampling Itō diffusion Bayesian inference in phylogeny Statistics Monte Carlo methods Markov chain Monte Carlo
5	Title of Course: Bayesian Biostatistics II (Jan – Apr[removed]A. Course Description This will be an introductory course on Bayesian statistics and methods, with a particular focus on Bayesian hierarchical models for cor Add to Reading List Source URL: med-fom-spph.sites.olt.ubc.ca Language: English - Date: 2014-09-05 12:03:37 Monte Carlo software Statistical theory Empirical Bayes method WinBUGS Bayesian inference Estimation theory Just another Gibbs sampler Bayesian inference in phylogeny Statistics Bayesian statistics Statistical inference
6	PDF Document Add to Reading List Source URL: ahsu.psychol.ucl.ac.uk Language: English - Date: 2012-01-09 14:25:14 Monte Carlo methods Markov chain Monte Carlo Markov processes Markov chain Metropolis–Hastings algorithm Random walk Bayesian inference in phylogeny Statistics Probability and statistics Markov models
7	Efficient Inference in Phylogenetic InDel Trees Alexandre Bouchard-Côté Michael I. Jordan Dan Klein Computer Science Division University of California at Berkeley c: Add to Reading List Source URL: www.stat.ubc.ca Language: English - Date: 2011-11-06 12:06:18 Bioinformatics Computational phylogenetics Markov chain Handel Nucleic acid sequence Exponential random graph models Bayesian inference in phylogeny Markov models Statistics Science
8	Syst. Biol. 61(4):579–593, 2012 c The Author(s[removed]Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. This is an Open Access article distributed under the t Add to Reading List Source URL: sysbio.oxfordjournals.org Language: English Computational phylogenetics Computational statistics Monte Carlo methods Bayesian inference in phylogeny Markov chain Monte Carlo Coalescent theory Phylogenetic tree Split Markov chain Statistics Phylogenetics Markov models
9	ORIGINAL ARTICLE doi:[removed]j[removed]00414.x ESTIMATING SPECIES TREES USING MULTIPLE-ALLELE DNA SEQUENCE DATA Liang Liu,1,2,3 Dennis K. Pearl,4,5 Robb T. Brumfield,6,7,8 and Scott V. Edwards1,9 Add to Reading List Source URL: www.oeb.harvard.edu Language: English - Date: 2008-09-06 12:28:54 Statistical genetics Computational phylogenetics Phylogenetics Population genetics Coalescent theory Phylogenetic tree Evolution Horizontal gene transfer Bayesian inference in phylogeny Biology Genetics Philosophy of biology
10	Tempering for Bayesian C&RT Nicos Angelopoulos [removed] James Cussens [removed] Add to Reading List Source URL: www.machinelearning.org Language: English - Date: 2008-12-01 11:14:12 Markov chain Bayesian network Posterior probability Conjugate prior Metropolis–Hastings algorithm Maximum likelihood Bayes estimator Naive Bayes classifier Bayesian inference in phylogeny Statistics Bayesian statistics Bayesian inference