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Coalescent theory
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1	The Neutral Model Evolution without selection: part II Joachim Hermisson Mathematics and Biosciences Group Mathematics & MFPL, University of Vienna Add to Reading List Source URL: www.mabs.at Language: English - Date: 2014-12-09 03:53:25 Population genetics Biology Genetics Evolutionary biology Coalescent theory Effective population size Variance Fitness Viral phylodynamics Fixation
2	Copyright Ó 2010 by the Genetics Society of America DOI: geneticsPatterns of Neutral Genetic Variation on Recombining Sex Chromosomes Mark Kirkpatrick,1 Rafael F. Guerrero and Samuel V. Scarpino Sect Add to Reading List Source URL: scarpino.github.io Language: English - Date: 2016-08-09 12:08:56 Genetics Biology Chromosomes Cytogenetics Population genetics Biology of gender Molecular genetics Y chromosome Coalescent theory Sex-determination system Homologous chromosome ZW sex-determination system
3	Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2015-07-22 13:03:02 Biology Phylogenetics Computational phylogenetics Genetics Population genetics Bioinformatics Horizontal gene transfer Phylogenetic network Coalescent theory Phylogenetic tree Sequence alignment Species
4	Bedford et al. BMC Evolutionary Biology 2011, 11:220 http://www.biomedcentral.com RESEARCH ARTICLE Open Access Add to Reading List Source URL: bedford.io Language: English - Date: 2014-11-18 16:59:29 Biology Population genetics Evolutionary biology Viral phylodynamics Coalescent theory Most recent common ancestor Selective sweep Antigenic drift Influenza Neutral theory of molecular evolution Effective population size Mutation
5	82 Genome Informatics 13: 82–Very Fast Algorithms for Evaluating the Stability of ML and Bayesian Phylogenetic Trees from Sequence Data Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-12-09 05:53:38 Statistics Statistical theory Computational statistics Bayesian statistics Statistical inference Monte Carlo methods Estimation theory Phylogenetics Bootstrapping Coalescent theory Markov chain Monte Carlo Phylogenetic tree
6	Siavash Mirarab Contact Information Academic Positions Add to Reading List Source URL: eceweb.ucsd.edu Language: English - Date: 2016-07-25 18:05:17 Bioinformatics Biology Computational phylogenetics Guggenheim Fellows Genetics Tandy Warnow Science Phylogenetics Coalescent theory Tandy Multiple sequence alignment Siavash
7	Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference Add to Reading List Source URL: bedford.io Language: English - Date: 2016-03-03 22:30:47 Statistics Statistical inference Statistical theory Probability distributions Survey methodology Infinitely divisible probability distributions Sampling Coalescent theory Bayesian inference Confidence interval Poisson distribution Viral phylodynamics
8	Why don’t my trees work? Previous work Check distribution of gene trees -need 30+ trees -AGTs must be quantified Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2015-04-28 11:51:12 Population genetics Statistical genetics Coalescent theory Gene flow Evolution
9	PDF Document Add to Reading List Source URL: www.mabs.at Language: English - Date: 2008-12-11 07:11:22 Population genetics Genetics Evolutionary biology Selection Mutation Fixation Genetic hitchhiking Coalescent theory Allele frequency Natural selection Selective sweep Linkage disequilibrium
10	Documentation Migrate VersionPeter Beerli Add to Reading List Source URL: popgen.sc.fsu.edu Language: English - Date: 2013-12-16 15:28:21 Bayesian statistics Estimation theory Statistical theory Statistical inference Marginal likelihood Probability theory Coalescent theory Likelihood function Bayesian inference Maximum likelihood estimation Bayes factor

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