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#	Item
41	Workflow for ChIP-seq & RNA-seq data analysis, GRS 2012 4 WORKFLOW FOR ANALYSIS OF CHIP-SEQ DATA INCLUDING ANALYSIS OF ENRICHED TRANCRIPTION FACTOR BINDING SITES -Gavin Schnitzler[removed]QUALITY CONTROL ON SEQUE Add to Reading List Source URL: sites.tufts.edu Language: English - Date: 2013-02-11 17:31:18 Molecular biology Gene expression Biological databases Protein methods Chip-sequencing RNA-Seq FASTA format TRANSFAC FASTQ format Biology Bioinformatics Biochemistry
42	Symbol GeneID Probeset Cluster TRANSFAC matrices Ahr 11622 1422631_at 11 AHRARNT_01, AHRARNT_02, AHRHIF_Q6, AHR_01, AHR_Q5 Atf1 11908 1417296_at 14 ATF1_Q6, CREBATF_Q6, CREB_Q3 Atf3 11910 1449363_at 25 ATF3_Q6, CREBATF_Q Add to Reading List Source URL: www.ncbi.nlm.nih.gov Language: English IRF7 IRF3 NFAT STAT1 FOXM1 FOX proteins RFX5 IRF5 HMGA2 Transcription factors Biology IRF2
43	Downloaded from www.genome.org on December 5, 2006 Experimental validation of predicted mammalian erythroid cis -regulatory modules Hao Wang, Ying Zhang, Yong Cheng, Yuepin Zhou, David C. King, James Taylor, Francesca C Add to Reading List Source URL: www.bx.psu.edu Language: English - Date: 2006-12-05 10:26:51 DNA Genetics Molecular biology Noncoding DNA GATA2 Promoter GATA1 Gene TRANSFAC Biology Gene expression Transcription factors
44	YEAST Yeast 2000; 16: 177±187. Yeast Functional Analysis Report A web site for the computational analysis of yeast Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 2002-02-15 11:32:18 Transcription factor Ridge Gene Regulatory sequence Bioinformatics DNA-binding domain Regulation of gene expression Transcriptional regulation Sequence motif Biology Gene expression TRANSFAC
45	April 2008 Faculty of 1000 Biology: By Scientists for Scientists Faculty of 1000 Biology (www.f1000biology.com/browse/) (F1000 Biology) is described as a “next generation literature awareness tool.” Its purpose is to Add to Reading List Source URL: info.hsls.pitt.edu Language: English - Date: 2011-06-14 11:14:02 Bibliographic databases Medicine Science PubMed Central TRANSFAC PubMed MEDLINE United States National Library of Medicine National Institutes of Health Biology Biological databases
46	Precise physical models of protein–DNA interaction from high-throughput data Justin B. Kinney, Gasˇper Tkacˇik, and Curtis G. Callan, Jr.* Physics Department and Lewis Sigler Institute for Integrative Genomics, Princ Add to Reading List Source URL: www.princeton.edu Language: English - Date: 2008-03-17 07:52:01 Bioinformatics Molecular biology Protein methods Molecular genetics Gene expression TRANSFAC DNA Chromatin immunoprecipitation Biology Biochemistry Chemistry
47	TRANSFAC® Pr of essi onal Add to Reading List Source URL: portal.biobase-international.com - Date: 2014-03-04 15:59:41
48	Page 1 of 14 AMERICAN ACADEMY OF OTOLARYNGOLOGYHEAD AND NECK SURGERY FOUNDATION ATTN: Stephanie Jones Assistant Director, Research and Quality Improvement 1650 Diagonal Road Add to Reading List Source URL: www.ahns.info Language: English - Date: 2013-08-01 14:04:19 Carcinogens Proteins Transcription factors Gene expression Human papillomavirus P53 Papillomaviridae TRANSFAC Head and neck cancer Biology Medicine Papillomavirus
49	Bioinformatics Advance Access published December 23, 2010 CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments Lakshmi Kuttippurathu1,†, Michael Hsing1,2,†, Yongchao Liu3, Bertil Add to Reading List Source URL: www.benchtobassinet.com Language: English - Date: 2014-06-10 09:24:12 Transcription factors Gene expression Molecular genetics Sequence motif TRANSFAC DNA binding site Nucleic acid sequence EMBOSS Biology Bioinformatics DNA
50	© 2003 Nature Publishing Group http://www.nature.com/naturebiotechnology LETTERS Computational discovery of gene modules and regulatory networks Add to Reading List Source URL: www.psrg.csail.mit.edu Language: English - Date: 2003-12-01 11:52:36 Cis-regulatory module Gene expression profiling Gene regulatory network Promoter Transcription factor TRANSFAC Gene Myc DNA microarray Biology Gene expression Ridge