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Phylogenetics
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#	Item
51	Genome Informatics 12: 204–Bioinformatics Issues for Automating the Annotation of Genomic Sequences∗ Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-01-17 03:51:05 Bioinformatics Biology Biological databases Computational phylogenetics Biotechnology National Institutes of Health BLAST Public-domain software National Center for Biotechnology Information GenBank Sequence database Expressed sequence tag
52	Neural Systems & Behavior Laboratory Experiments for the Integrative Molecular Neuroscience Module 1 Add to Reading List Source URL: www.mbl.edu Language: English - Date: 2014-07-01 11:14:50 Biology Bioinformatics Molecular biology Computational phylogenetics National Center for Biotechnology Information Neuroethology BLAST Multiple sequence alignment Sequence alignment Gene expression FASTA Nucleic acid sequence
53	An experimental study comparing linguistic phylogenetic reconstruction methods Franc¸ois Barbanc¸on,1 Steven N. Evans,2 Luay Nakhleh3 Don Ringe,4 , and Tandy Warnow,5,∗ 1 2 Add to Reading List Source URL: web.engr.illinois.edu Language: English - Date: 2014-08-30 15:58:32 Phylogenetics Computational phylogenetics Biology Maximum parsimony Models of DNA evolution Luay Nakhleh Character evolution Edge Quantitative comparative linguistics
54	New methods for es-ma-ng species trees from genome-scale data Tandy Warnow The University of Illinois Species Tree Es9ma9on Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2016-06-25 07:57:15 Biology Bioinformatics Genetics Molecular biology Binning Phylogenomics Gene Phylogenetics
55	Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2015-07-22 13:03:02 Biology Phylogenetics Computational phylogenetics Genetics Population genetics Bioinformatics Horizontal gene transfer Phylogenetic network Coalescent theory Phylogenetic tree Sequence alignment Species
56	Pairwise Sequence Alignment with Gaps with GPU Thomas C. Carroll Jude-Thaddeus Ojiaku Prudence W.H. Wong Add to Reading List Source URL: cgi.csc.liv.ac.uk Language: English - Date: 2015-10-05 11:33:32 Computational phylogenetics Bioinformatics Biology Applied mathematics BLAST Sequence alignment SmithWaterman algorithm Speedup Parallel computing Dynamic programming General-purpose computing on graphics processing units Multiple sequence alignment
57	CMLS, Cell. Mol. Life Sci– 682X $ 1.50 + 0.20/0 © Birkhäuser Verlag, Basel, 2001 CMLS Add to Reading List Source URL: chopo.pntic.mec.es Language: English Biology Spinus Phylogenetics Black-headed siskin Siskin Lesser goldfinch Cladogram Maximum parsimony Phenetics Black siskin Systematics Long branch attraction
58	CSE 181 Project guidelines Add to Reading List Source URL: www.cs.bilkent.edu.tr Language: English - Date: 2012-11-08 10:11:00 Formal languages Mathematics Bioinformatics Computational phylogenetics Combinatorics Software engineering FASTA Substring String searching algorithm Matching String Pattern matching
59	MrBayesPrimer (with a focus on model selection) Jeremy M. Brown Dept. of Biological Sciences Louisiana State University www.phyleauxgenetics.org Add to Reading List Source URL: treethinkers.org Language: English - Date: 2014-03-09 14:13:45 Statistics Statistical theory Probability Bayesian statistics Bioinformatics Computational phylogenetics Command shells Probability distributions Markov chain Monte Carlo Substitution model IBM i Control Language Command-line interface
60	CSE 584A Class 15 Jeremy Buhler March 21, 2016 1 Add to Reading List Source URL: classes.engineering.wustl.edu Language: English - Date: 2016-03-20 22:29:46 Computational phylogenetics Bioinformatics Biology Dynamic programming Applied mathematics Sequence alignment Gap penalty Levenshtein distance Alignment String searching algorithm Multiple sequence alignment NeedlemanWunsch algorithm

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