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Phylogenetics
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#	Item
181	LNCSA Parsimony Approach to Genome-Wide Ortholog Assignment Add to Reading List Source URL: msoar.cs.ucr.edu Language: English - Date: 2007-01-02 18:39:17 Genomics Evolutionary biology Phylogenetics Molecular evolution Genetics Homology Gene duplication Gene Comparative genomics Genome Bioinformatics Synteny
182	MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods Koichiro Tamura,1,2 Daniel Peterson,2 Nicholas Peterson,2 Glen Stecher,2 Masatoshi Nei,3 and Add to Reading List Source URL: www.megasoftware.net Language: English - Date: 2016-01-11 15:52:39 Computational phylogenetics Phylogenetics Bioinformatics Sequence alignment Masatoshi Nei Multiple sequence alignment Substitution model Maximum parsimony Molecular clock Nucleic acid sequence Lineage Phylogenetic tree
183	1 Large-scale multiple sequence alignment and phylogeny estimation Tandy Warnow1,∗ 1 Department of Computer Science, University of Texas at Austin, Austin, Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2014-08-30 16:01:16 Computational phylogenetics Bioinformatics Phylogenetics Multiple sequence alignment Sequence alignment Protein methods Phylogenetic tree Structural alignment Maximum parsimony Homology Protein superfamily Clustal
184	PERFECT PHYLOGENETIC NETWORKS: A NEW METHODOLOGY FOR RECONSTRUCTING THE EVOLUTIONARY HISTORY OF NATURAL LANGUAGES LUAY NAKHLEH DON RINGE Add to Reading List Source URL: www.cs.rice.edu Language: English - Date: 2005-07-11 22:58:50 Historical linguistics Phylogenetics Language comparison Computational phylogenetics Tree model Tandy Warnow Perfect phylogeny Indo-European languages Phylogenetic tree Genetic relationship Comparative method Phylogenetic network
185	J. Math. Biol:367–397 DOIs00285x Mathematical Biology The reconstructed tree in the lineage-based model Add to Reading List Source URL: www.biologie.ens.fr Language: English - Date: 2015-01-16 11:48:01 Evolutionary biology Ecology Phylogenetics Evolution Coalescent theory Phylogenetic tree Ecological speciation Speciation Extinction Species
186	Inferring the Dynamics of Diversification: A Coalescent Approach He´le`ne Morlon1, Matthew D. Potts2, Joshua B. Plotkin1 1 Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, United States o Add to Reading List Source URL: www.biologie.ens.fr Language: English - Date: 2014-06-05 09:06:33 Biology Evolutionary biology Phylogenetics Ecology Population genetics Evolution Diversification rates Coalescent theory Speciation Molecular phylogenetics Extinction event Biodiversity
187	doi:rspb Add to Reading List Source URL: www.biologie.ens.fr Language: English - Date: 2014-06-05 09:06:33 Biology Phylogenetics Evolutionary biology Measurement of biodiversity Phylogenetic diversity Systematics Diversification rates
188	Syst. Biol. 65(3):495–507, 2016 © The Author(sPublished by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: journals.permissions@o Add to Reading List Source URL: www.biologie.ens.fr Language: English - Date: 2016-06-06 11:26:10 Phylogenetics Biology Mathematics Academia Lineage Viral phylodynamics Phylogenetic tree Split Modularity Tree Ultrametric space Hierarchical clustering
189	E MBARRASSMENT OF R ICHES C HALLENGES Indexes in Comparative Genomics Bernhard Haubold Add to Reading List Source URL: guanine.evolbio.mpg.de Language: English - Date: 2010-11-09 12:07:10 Biology Bioinformatics Genomics Genetics Computational phylogenetics Biological databases BLOSUM Genome AhoCorasick algorithm GenBank BLAST Arabidopsis
190	Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity Jessica A. Bryant†, Christine Lamanna‡, He´le`ne Morlon, Andrew J. Kerkhoff§, Brian J. Enquist‡¶储, and Jessica L. Add to Reading List Source URL: www.biologie.ens.fr Language: English - Date: 2014-06-05 09:06:32 Biodiversity Ecology Measurement of biodiversity Biogeography Habitat Elevational diversity gradient Phylogenetic tree Phylogenetics Phylogenetic diversity Phylogenetic niche conservatism Taxonomy Species

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