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BAli-Phy
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#	Item
1	1 Large-scale multiple sequence alignment and phylogeny estimation Tandy Warnow1,∗ 1 Department of Computer Science, University of Texas at Austin, Austin, Add to Reading List Source URL: web.engr.illinois.edu Language: English - Date: 2014-08-30 16:01:16 Computational phylogenetics Bioinformatics Biology Multiple sequence alignment Sequence alignment Phylogenetic tree Maximum parsimony Structural alignment Protein superfamily Clustal Phylo BAli-Phy
2	Mul$ple sequence alignment methods: evidence from data CS/BioE 598 Tandy Warnow Alignment Error/Accuracy Add to Reading List Source URL: tandy.cs.illinois.edu Language: English - Date: 2016-02-15 21:08:56 Computational phylogenetics Bioinformatics MAFFT ProbCons MUSCLE Clustal BAli-Phy Multiple sequence alignment
3	BIOINFORMATICS APPLICATIONS NOTE Vol. 22 no[removed], pages 2047–2048 doi:[removed]bioinformatics/btl175 Phylogenetics Add to Reading List Source URL: www.bali-phy.org Language: English - Date: 2013-02-11 18:31:14 Statistics Biology Sequence alignment Multiple sequence alignment Phylogenetic tree Hidden Markov model Indel Phylogenetics Bayesian inference Bioinformatics Computational phylogenetics Science
4	Article (Methods) Erasing Errors Due to Alignment Ambiguity When Estimating Positive Selection Authors Benjamin Redelings1,2 Add to Reading List Source URL: www.bali-phy.org Language: English - Date: 2014-04-08 12:41:12 Bayesian inference Statistical inference Statistical theory Sequence alignment Bayes factor Multiple sequence alignment MUSCLE Confidence interval Phylogenetic tree Statistics Computational phylogenetics Bioinformatics
5	Syst. Biol. 54(3):401–418, 2005 c Society of Systematic Biologists Copyright ISSN: [removed]print[removed]836X online DOI: [removed][removed] Add to Reading List Source URL: www.bali-phy.org Language: English - Date: 2013-02-11 18:31:14 Biology Genetics Sequence alignment Multiple sequence alignment Maximum parsimony Indel Substitution model Phylogenetic tree Phylo Computational phylogenetics Bioinformatics Science