Abstracting Vector Architectures in Library Generators: Case Study Convolution Filters Alen Stojanov† † Georg Ofenbeck†

Source URL: spiral.ece.cmu.edu

• Array programming
• Generic programming
• Fourier transform
• Computer programming
• Analysis
• Software engineering
• Loop tiling
• Multidimensional DSP with GPU Acceleration

Identifying Regions of Genome Linked to Cancer Watkins, Hannah; John, Bino; Liu, Guodong; Lin, Yuefeng Department of Computational Biology University of Pittsburgh Data from a tiling array indicated 357 regions of the hu

Source URL: www.csb.pitt.edu

This article was published in an Elsevier journal. The attached copy is furnished to the author for non-commercial research and education use, including for instruction at the author’s institution, sharing with colleag

Source URL: cgi.csc.liv.ac.uk

• Biology
• Genetics
• Genomics
• Chemistry
• Gene expression
• Microarrays
• Bioinformatics
• DNA
• DNA microarray
• Human genome
• Expressed sequence tag
• Tiling array

The Multinational Coordinated Functional Genomics Arabidopsis thaliana Functional Genomics Project Annual Report 2005

Source URL: arabidopsis.info

• Biology
• Genetics
• Bioinformatics
• Genomics
• Gene expression
• Molecular biology
• Molecular genetics
• The Arabidopsis Information Resource
• Arabidopsis thaliana
• Arabidopsis
• Tiling array
• Genome

CS:APP2e Web Aside MEM:BLOCKING: Using Blocking to Increase Temporal Locality∗ Randal E. Bryant David R. O’Hallaron June 5, 2012

Source URL: csapp.cs.cmu.edu

• Compiler optimizations
• Numerical linear algebra
• Cache
• Computer memory
• Locality of reference
• Software optimization
• Matrix multiplication
• Loop optimization
• Matrix
• Array data type
• Loop nest optimization
• Loop tiling

Identification of non reliable probes on customized Affymetrix Mouse430_2 platform It is well known that Affymetrix Chip Definition Files (CDFs), contain wrongly annotated probes that lead to misinterpretation of the exp

Source URL: www.iscb.org

• Microarrays
• Tiling array
• DNA microarray

Better Tiling and Array Contraction for Compiling Scientific Programs ∗ Geoff Pike and Paul N. Hilfinger Computer Science Division University of California at Berkeley {pike,hilfinger}@cs.berkeley.edu

Source URL: titanium.cs.berkeley.edu

• Compiler optimizations
• Compiler construction
• Optimizing compiler
• Programming language implementation
• Foreach loop
• Aliasing
• Automatic parallelization
• GNU Compiler Collection
• Loop tiling

247 COMPARISON OF SMOKING-INDUCED GENE EXPRESSION ON AFFYMETRIX EXON AND 3’-BASED EXPRESSION ARRAYS XIAOLING ZHANG1

Source URL: www.jsbi.org

• Gene expression
• RNA splicing
• Spliceosome
• DNA
• Molecular biology
• Alternative splicing
• Exon
• RNA-Seq
• Tiling array

Additional material September 1st, 2005 (Eastern Time, USA) The discovery of a novel RNA Continent through comprehensive analyses of mammalian transcriptomes. The FANTOM Consortium for Genome Exploration Research Group,

Source URL: fantom.gsc.riken.jp

• Molecular biology
• RNA
• Gene expression
• Genetics
• Transcriptome
• Tiling array
• Noncoding DNA
• Cap analysis gene expression
• Transcription
• Genome
• Sense
• Sequencing

j1 1 Introduction to DNA Microarrays Chris Seidel

Source URL: www.wiley-vch.de

• Molecular biology
• Chemistry
• Bioinformatics
• Gene expression
• DNA
• DNA microarray
• Tiling array
• ChIP-on-chip
• Oligonucleotide
• Biology
• Biochemistry
• Microarrays