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#	Item
61	Efficient Inference in Phylogenetic InDel Trees Alexandre Bouchard-Cˆot´e† Michael I. Jordan†‡ Dan Klein† † Add to Reading List Source URL: papers.nips.cc Language: English - Date: 2014-02-24 04:51:44 Science Genetics Phylogenetics Sequence alignment Phylogenetic tree Multiple sequence alignment Phylo Binary tree Nucleic acid sequence Computational phylogenetics Bioinformatics Biology
62	Variational Inference over Combinatorial Spaces ∗ Alexandre Bouchard-Cˆot´e∗ Michael I. Jordan∗,† Add to Reading List Source URL: papers.nips.cc Language: English - Date: 2014-02-24 03:42:33 Computational science Sequence alignment Clustal ProbCons Multiple sequence alignment Algorithm Belief propagation Phylo Neural network Computational phylogenetics Bioinformatics Science
63	Package ‘iteRates’ July 2, 2014 Type Package Title Parametric rate comparison Version 3.1 Date[removed] Add to Reading List Source URL: cran.r-project.org Language: English - Date: 2014-07-02 12:12:50 Tree Phylo Data management Computing Graph theory R-tree B-tree
64	adephylo: exploratory analyses for the phylogenetic comparative method Thibaut Jombart and St´ephane Dray August 10, 2013 Contents Add to Reading List Source URL: cran.r-project.org Language: English - Date: 2014-07-02 11:12:47 Citizen science Crowdsourcing Phylo Statistical hypothesis testing Object-oriented design ROOT Null Science Statistics Application software
65	Package ‘apTreeshape’ July 2, 2014 Date 2009-03-13 Version 1.4-5 Title Analyses of Phylogenetic Treeshape Author Nicolas Bortolussi, Eric Durand, Michael Blum , Olivier Francois Add to Reading List Source URL: cran.r-project.org Language: English - Date: 2014-07-02 11:14:49 Binary tree Data management Cladistics Phylogenetic tree Phylo B-tree Clade R-tree Christmas tree Phylogenetics Christmas Science
66	Package ‘recluster’ July 2, 2014 Type Package Title Ordination methods for the analysis of beta-diversity indices. Version 2.5 Date[removed] Add to Reading List Source URL: cran.r-project.org Language: English - Date: 2014-07-02 16:15:48 Data analysis Beta diversity Phylogenetics Alpha diversity Nestedness Phylo Hierarchical clustering Bootstrapping Diversity index Statistics Measurement of biodiversity Statistical inference
67	Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments Add to Reading List Source URL: molevol.cmima.csic.es Language: English - Date: 2008-08-20 11:05:12 Biology Sequence alignment Multiple sequence alignment T-Coffee Clustal Phylo MUSCLE MAFFT Maximum parsimony Computational phylogenetics Science Bioinformatics
68	Package ‘picante’ July 2, 2014 Type Package Title R tools for integrating phylogenies and ecology Version[removed]Date[removed] Add to Reading List Source URL: cran.r-project.org Language: English - Date: 2014-07-02 16:02:54 Phylo UniFrac Regression analysis Quantile regression Genetic distance Correlation and dependence Phylogenetics Statistics Science
69	© 1999 Oxford University Press Nucleic Acids Research, 1999, Vol. 27, No[removed]–3910 Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 1999-11-15 15:31:58 Biology Genetics Sequence alignment Multiple sequence alignment Consensus sequence Conserved sequence Nucleic acid sequence Sequence motif Phylo Bioinformatics Computational phylogenetics Science
70	Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis Add to Reading List Source URL: molevol.cmima.csic.es Language: English - Date: 2008-08-20 11:05:11 Biology Genetics Sequence alignment BLOSUM Substitution matrix Phylogenetic tree Conserved sequence Phylo Nucleic acid sequence Bioinformatics Computational phylogenetics Science

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