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MicrobesOnline
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#	Item
11	FastTree: Neighbor-Joining with Profiles instead of a Distance Matrix Morgan N Price∗1,2 , Paramvir S Dehal1,2 and Adam P Arkin1,2,3 1 Physical Biosciences Division, Lawrence Berkeley National Lab, 1 Cyclotron Road Mai Add to Reading List Source URL: meta.microbesonline.org Language: English - Date: 2008-04-24 15:12:01 Science Biology Matrices Neighbor joining Maximum parsimony Multiple sequence alignment Sequence alignment Distance matrix B-tree Computational phylogenetics Bioinformatics Phylogenetics
12	Nucleic Acids Research Advance Access published November 6, 2008 Nucleic Acids Research, 2008, 1–5 doi:[removed]nar/gkn757 DOOR: a database for prokaryotic operons Fenglou Mao1,2, Phuongan Dam1,2, Jacky Chou1,2, Victor Add to Reading List Source URL: bioenergycenter.org Language: English - Date: 2010-03-01 16:47:48 Ridge MicrobesOnline Modulon Regulon Non-coding RNA Cis-regulatory element Sequence motif Gene Attenuator Biology Gene expression Operon
13	DOE/SC[removed]Joint Meeting Genomics:GTL Awardee Workshop VI and Add to Reading List Source URL: genomicscience.energy.gov Language: English - Date: 2010-11-30 14:41:08 Energy Bioinformatics Bioengineering Jay Keasling MicrobesOnline Keller Metabolism Biomass Biofuel Bioenergy Sustainability Environment
14	Regulatory Processes Section 3 Regulatory Processes Add to Reading List Source URL: genomicscience.energy.gov Language: English - Date: 2010-11-30 14:40:56 Operon Caulobacter crescentus Ridge Regulation of gene expression Functional genomics Gene MicrobesOnline Regulatory sequence Promoter Biology Gene expression Biochemistry
15	GTL Milestone 2 Develop Methods and Concepts Needed to Achieve a Systems-Level Understanding of Microbial Cell and Community Function, Regulation, and Dynamics Add to Reading List Source URL: genomicscience.energy.gov Language: English - Date: 2010-11-30 14:41:00 Bioinformatics United States Department of Energy National Laboratories University of California Biological databases MicrobesOnline Joint Genome Institute Desulfovibrio vulgaris Genomics Metagenomics Microbiology Biology Clinical pathology
16	See addendum for additional abstracts. Systems Enviromental Microbiology Systems Environmental Microbiology 36 Add to Reading List Source URL: genomicscience.energy.gov Language: English - Date: 2010-11-30 14:41:07 Desulfovibrio vulgaris D. vulgaris Desulfovibrio MicrobesOnline Environmental microbiology Sulfate-reducing bacteria Geobacter Biofilm Metagenomics Biology Microbiology Clinical pathology
17	GTL Milestone 1 Develop Techniques to Determine the Genome Structure and Functional Potential of Microbes and Microbial Communities Add to Reading List Source URL: genomicscience.energy.gov Language: English - Date: 2010-11-30 14:41:00 Bioinformatics Genetic mapping Microbiology Bioengineering Escherichia coli Shewanella Genome project MicrobesOnline Comparative genomics Biology Genetics Genomics
18	DOE/SC[removed]Joint Meeting Genomics:GTL Awardee Workshop VI and Add to Reading List Source URL: genomicscience.energy.gov Language: English - Date: 2010-11-30 14:41:08 Energy Bioinformatics Bioengineering Jay Keasling MicrobesOnline Keller Metabolism Biomass Biofuel Bioenergy Sustainability Environment
19	GTL Milestone 3 Develop the Knowledgebase, Computational Methods, and Capabilities to Advance Understanding and Prediction of Complex Biological Systems Section 1 Add to Reading List Source URL: genomicscience.energy.gov Language: English - Date: 2010-11-30 14:41:00 Science Biological databases Omics MicrobesOnline Genome browser Comparative genomics Joint Genome Institute Functional genomics Metagenomics Bioinformatics Biology Genomics
20	Appendix 2: Web Sites Program Web Sites • Genomics:GTL Web site: http://doegenomestolife.org Add to Reading List Source URL: genomicscience.energy.gov Language: English - Date: 2010-11-30 14:40:57 Biological databases Genomics Alteromonadales Microbiology Shewanella BioCyc database collection Joint Genome Institute MicrobesOnline Ralstonia Biology Bioinformatics Science

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