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DNA sequencing theory
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#	Item
1	How to apply de Bruijn graphs to genome assembly Add to Reading List Source URL: www.nature.com Language: English - Date: 2012-01-20 11:24:28 Graph theory Mathematics Bioinformatics NP-complete problems Computational biology DNA sequencing K-mer Velvet assembler Eulerian path Hamiltonian path Degree Seven Bridges of Knigsberg
2	Running SNAP The SNAP Team September, Introduction SNAP is a tool that is intended to serve as the read aligner in a gene sequencing pipeline. Its theory of Add to Reading List Source URL: snap.cs.berkeley.edu Language: English - Date: 2013-12-20 16:37:24 Bioinformatics Genetics Search algorithms Biology Public-domain software Computational phylogenetics DNA sequencing SAMtools Sequence alignment Hash function Hash table Human genome
3	IDBA - A Practical Iterative de Bruijn Graph De Novo Assembler Yu Peng, Henry C.M. Leung, S.M. Yiu, Francis Y.L. Chin Department of Computer Science, The University of Hong Kong Pokfulam Road, Hong Kong {ypeng, cmleung2, Add to Reading List Source URL: i.cs.hku.hk Language: English - Date: 2010-10-15 06:44:36 Graph theory Genomics Molecular biology DNA sequencing Velvet assembler Contig Connectivity Degree Sequence assembly Bioinformatics Mathematics Biology
4	DNAStar_Background_DNA_Draft2 Add to Reading List Source URL: www.dnastar.com Language: English - Date: 2014-09-14 22:48:31 Bioinformatics DNA sequencing Biostatistics Statistical theory Molecular biology Sequence assembly Workflow DNASTAR Accuracy and precision Statistics Science Biology
5	Assembly in theory and practice Jesper Jensen Bjerg, [removed], Aarhus University October 25, 2012 Contents 1 Introduction Add to Reading List Source URL: www.stats.ox.ac.uk Language: English - Date: 2014-02-12 06:28:23 Molecular biology Genomics DNA sequencing Biotechnology Contig Sequence assembly Full genome sequencing Ion semiconductor sequencing Genome Biology Genetics Bioinformatics
6	DNA sequencing is the basic workhorse of modern day biology and medicine. Shotgun sequencing is the dominant technique used: many randomly located short fragments called reads are extracted from the DNA sequence, and the Add to Reading List Source URL: www.science-of-medicine.netne.net Language: English - Date: 2013-02-01 20:32:06 Bioinformatics Molecular biology Genomics DNA sequencing theory Shotgun sequencing Sequence assembly Contig Genome DNA Biology Genetics DNA sequencing
7	J. Chem. Theory Comput. 2007, 3, [removed] Add to Reading List Source URL: skms.impb.psn.ru Language: English - Date: 2007-11-07 13:02:18 Genetics Helices Genomics Biochip Nucleic acid sequence Nucleic acid double helix Gene Molecular models of DNA Nanopore sequencing Biology Molecular biology DNA

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