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Velvet assembler
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#	Item
1	CAREER: ABI: Assembling Extremely Large Metagenomes C. Titus Brown Monday, July 23rd, 2012 Keywords: assembly, bioinformatics, next generation sequencing, metagenomics, Add to Reading List Source URL: ged.msu.edu Language: English - Date: 2012-07-23 15:57:56 Biology Bioinformatics Genetics Molecular biology DNA sequencing Genomics Environmental microbiology Velvet assembler Metagenomics K-mer Sequence assembly RNA-Seq
2	Memory Efficient Minimum Substring Partitioning Yang Li, Pegah Kamousi, Fangqiu Han, Shengqi Yang, Xifeng Yan, Subhash Suri University of California, Santa Barbara {yangli, pegah, fhan, sqyang, xyan, suri}@cs.ucsb.edu A Add to Reading List Source URL: www.cs.ucsb.edu Language: English - Date: 2013-07-16 15:28:48 Mathematics Academia Discrete mathematics Combinatorics Bioinformatics Computational biology Formal languages K-mer Substring Partition Comparison of programming languages Velvet assembler
3	How to apply de Bruijn graphs to genome assembly Add to Reading List Source URL: www.nature.com Language: English - Date: 2012-01-20 11:24:28 Graph theory Mathematics Bioinformatics NP-complete problems Computational biology DNA sequencing K-mer Velvet assembler Eulerian path Hamiltonian path Degree Seven Bridges of Knigsberg
4	Microsoft Word - GIW_Collins_Biggs.doc Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2008-12-13 19:48:59 Molecular biology Bioinformatics Genomics DNA sequencing Gene expression Expressed sequence tag Sequence assembly Contig Sanger sequencing Genome Velvet assembler Sequencing
5	Supplementary Information and Figures for “Consed: A Graphical Editor for Next-Generation Sequencing” by David Gordon and Phil Green S1 Input data requirements Consed requires reads and alignments either in BAM forma Add to Reading List Source URL: bozeman.mbt.washington.edu Language: English - Date: 2013-12-23 17:42:19 Biology Bioinformatics Molecular biology Genetics DNA sequencing Genomics Computational science Contig Consed Phrap Velvet assembler SAMtools
6	Supplementary Information and Figures for “Consed: A Graphical Editor for Next-Generation Sequencing” by David Gordon and Phil Green S1 Input data requirements Consed requires reads and alignments either in BAM forma Add to Reading List Source URL: www.phrap.org Language: English - Date: 2013-12-23 17:42:19 Bioinformatics Molecular biology DNA sequencing Computational science Genomics Contig Consed Phrap Velvet assembler SAMtools ACE Expressed sequence tag
7	Parallelization of Velvet,“a de novo genome sequence assembler” Nitin Joshi§†∗ , Shashank Shekhar Srivastava§†∗ , M. Milner Kumar† , Jojumon Kavalan† , Shrirang K. Karandikar† and Arundhati Saraph† Add to Reading List Source URL: www.hipc.org Language: English - Date: 2011-11-11 12:59:10 Search algorithms Molecular biology DNA sequencing Velvet assembler Sequence assembly Parallel computing Hash table Hash function Shotgun sequencing Biology Bioinformatics Genetics
8	Proceedings Template - WORD Add to Reading List Source URL: i.cs.hku.hk Language: English - Date: 2014-02-12 04:29:11 Molecular biology Genomics DNA sequencing DNA Contig De novo transcriptome assembly Velvet assembler Expressed sequence tag Sequence assembly Biology Bioinformatics Genetics
9	IDBA - A Practical Iterative de Bruijn Graph De Novo Assembler Yu Peng, Henry C.M. Leung, S.M. Yiu, Francis Y.L. Chin Department of Computer Science, The University of Hong Kong Pokfulam Road, Hong Kong {ypeng, cmleung2, Add to Reading List Source URL: i.cs.hku.hk Language: English - Date: 2010-10-15 06:44:36 Graph theory Genomics Molecular biology DNA sequencing Velvet assembler Contig Connectivity Degree Sequence assembly Bioinformatics Mathematics Biology
10	The GeneiousRead Mapper Authors Developer: Matthew Kearse Authors: Matthew Kearse, Shane Sturrock, Peter Meintjes Abstract Add to Reading List Source URL: assets.geneious.com Language: English - Date: 2013-09-25 20:23:46 Computational phylogenetics Biomatters DNA sequencing Smith–Waterman algorithm Molecular biology Velvet assembler Bioinformatics Science Geneious

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