SAMtools

Results: 32



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21Sequence Alignment/Map Format Specification The SAM/BAM Format Specification Working Group 11 May 2015 The master version of this document can be found at https://github.com/samtools/hts-specs. This printing is version b

Sequence Alignment/Map Format Specification The SAM/BAM Format Specification Working Group 11 May 2015 The master version of this document can be found at https://github.com/samtools/hts-specs. This printing is version b

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Source URL: samtools.github.io

Language: English - Date: 2015-06-03 15:01:36
    22Vyverman et al. BMC Bioinformatics:159 DOIs12859SOFTWAR E Open Access

    Vyverman et al. BMC Bioinformatics:159 DOIs12859SOFTWAR E Open Access

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    Source URL: www.biomedcentral.com

    Language: English
    23Table S6: Metrics after applying the filter of MAPQ filter =>30 with samtools (a), GATK (b), Freebayes (c) and Bambino (d). a. # of SNPs # of SNP after No. of Exonic Aligner called

    Table S6: Metrics after applying the filter of MAPQ filter =>30 with samtools (a), GATK (b), Freebayes (c) and Bambino (d). a. # of SNPs # of SNP after No. of Exonic Aligner called

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    Source URL: www.ncbi.nlm.nih.gov

    Language: English
    24Samtools CRAMS in support for improved compression formats

    Samtools CRAMS in support for improved compression formats

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    Source URL: medicalxpress.com

    Language: English - Date: 2014-12-03 07:14:03
    25BCF2 Quick Reference (r198) In BCF2, each key in the FILTER, INFO and FORMAT fields is required to be defined in the VCF header. For each record, a key is stored as an integer which is the index of its first appearance

    BCF2 Quick Reference (r198) In BCF2, each key in the FILTER, INFO and FORMAT fields is required to be defined in the VCF header. For each record, a key is stored as an integer which is the index of its first appearance

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    Source URL: samtools.github.io

    Language: English - Date: 2014-09-12 06:54:45
    26The Tabix index file format Heng Li Field magic n ref format

    The Tabix index file format Heng Li Field magic n ref format

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    Source URL: samtools.github.io

    Language: English - Date: 2014-09-12 06:54:45
    27[This is a quick reference for BCF1, as historically implemented in Samtools. The BCF1 format is obsolete; BCF2 is widely implemented and recommended for use instead of this legacy format.] Field magic l seqnm seqnm

    [This is a quick reference for BCF1, as historically implemented in Samtools. The BCF1 format is obsolete; BCF2 is widely implemented and recommended for use instead of this legacy format.] Field magic l seqnm seqnm

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    Source URL: samtools.github.io

    Language: English - Date: 2014-09-12 06:54:45
    28The Variant Call Format (VCF) Version 4.1 Specification 17 Dec 2013 The master version of this document can be found at https://github.com/samtools/hts-specs. This printing is version c02ad4c from that repository, last

    The Variant Call Format (VCF) Version 4.1 Specification 17 Dec 2013 The master version of this document can be found at https://github.com/samtools/hts-specs. This printing is version c02ad4c from that repository, last

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    Source URL: samtools.github.io

    Language: English - Date: 2014-09-12 06:54:45
    29Comparison of The Genome Analysis Toolkit’s Unified Genotyper and SAMtools as variant callers across 84 exomes. K Hetrick, H Ling, E Pugh, S Griffith, B Craig, B Marosy, KF Doheny Center for Inherited Disease Research

    Comparison of The Genome Analysis Toolkit’s Unified Genotyper and SAMtools as variant callers across 84 exomes. K Hetrick, H Ling, E Pugh, S Griffith, B Craig, B Marosy, KF Doheny Center for Inherited Disease Research

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    Source URL: www.cidr.jhmi.edu

    Language: English - Date: 2014-05-30 09:11:58