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Newbler
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1	INPUT / OUTPUT Less stringent 1. EXTRACT DATA SFF file Add to Reading List Source URL: prinseq.sourceforge.net Language: English - Date: 2011-01-18 18:24:41 Bioinformatics Mathematical and theoretical biology Biology FASTQ format Biotechnology FASTA format FASTA SAM Electronic filter Entropy Biological data Newbler
2	Try an assembly! This will provide an example of how to assemble reads using Newbler aka “GS De Novo Assembler”. Download the reads. From within your SEA Virtual Machine, go to phagesdb.org. Add to Reading List Source URL: phagesdb.org Language: English - Date: 2014-12-11 09:56:36 FASTQ format Bioinformatics Computational science Consed
3	File Format Convert Check Quality Improve Quality Genome Assembly Add to Reading List Source URL: trishul.sci.gu.edu.au Language: English - Date: 2015-03-02 17:45:44 FASTQ format Newbler 454 Life Sciences FASTA format Sequence assembly Phred quality score Shotgun sequencing Data file Bioinformatics Biology Science
4	454 Life Sciences Technical Manual Add to Reading List Source URL: 454.com Language: English - Date: 2013-11-13 15:43:03 Biochemistry 454 Life Sciences GS Standard Flowgram Format Raw image format Sequencing Roche Applied Science Newbler DNA sequencing Biology Molecular biology
5	Report mira341 phrap newbler # contigs (>= 0 bp[removed] Add to Reading List Source URL: www.jgenomics.com - Date: 2014-05-21 07:01:11
6	Next-Gen Sequencing and data processing Li-Jun Ma Umass Amherst Fusarium Workshop Asilomar March[removed] Add to Reading List Source URL: www.fgsc.net Language: English - Date: 2011-03-22 13:16:09 Bioinformatics Genomics DNA sequencing Computational science Contig Full genome sequencing Shotgun sequencing 454 Life Sciences Newbler Biology Molecular biology Genetics
7	SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds Add to Reading List Source URL: www.ncbi.nlm.nih.gov Language: English Bioinformatics DNA Biotechnology FASTQ format Phred quality score 454 Life Sciences Newbler Full genome sequencing Pyrosequencing Biology Molecular biology DNA sequencing

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