INPUT / OUTPUT Less stringent 1. EXTRACT DATA SFF file

Source URL: prinseq.sourceforge.net

• Bioinformatics
• Mathematical and theoretical biology
• Biology
• FASTQ format
• Biotechnology
• FASTA format
• FASTA
• SAM
• Electronic filter
• Entropy
• Biological data
• Newbler

Try an assembly! This will provide an example of how to assemble reads using Newbler aka “GS De Novo Assembler”. Download the reads. From within your SEA Virtual Machine, go to phagesdb.org.

Source URL: phagesdb.org

• FASTQ format
• Bioinformatics
• Computational science
• Consed

File Format Convert Check Quality Improve Quality Genome Assembly

Source URL: trishul.sci.gu.edu.au

• FASTQ format
• Newbler
• 454 Life Sciences
• FASTA format
• Sequence assembly
• Phred quality score
• Shotgun sequencing
• Data file
• Bioinformatics
• Biology
• Science

454 Life Sciences Technical Manual

Source URL: 454.com

• Biochemistry
• 454 Life Sciences
• GS
• Standard Flowgram Format
• Raw image format
• Sequencing
• Roche Applied Science
• Newbler
• DNA sequencing
• Biology
• Molecular biology

Report mira341 phrap newbler # contigs (>= 0 bp[removed]

Source URL: www.jgenomics.com

Next-Gen Sequencing and data processing Li-Jun Ma Umass Amherst Fusarium Workshop Asilomar March[removed]

Source URL: www.fgsc.net

• Bioinformatics
• Genomics
• DNA sequencing
• Computational science
• Contig
• Full genome sequencing
• Shotgun sequencing
• 454 Life Sciences
• Newbler
• Biology
• Molecular biology
• Genetics

SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds

Source URL: www.ncbi.nlm.nih.gov

• Bioinformatics
• DNA
• Biotechnology
• FASTQ format
• Phred quality score
• 454 Life Sciences
• Newbler
• Full genome sequencing
• Pyrosequencing
• Biology
• Molecular biology
• DNA sequencing