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CAREER: ABI: Assembling Extremely Large Metagenomes C. Titus Brown Monday, July 23rd, 2012 Keywords: assembly, bioinformatics, next generation sequencing, metagenomics,

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• Biology
• Bioinformatics
• Genetics
• Molecular biology
• DNA sequencing
• Genomics
• Environmental microbiology
• Velvet assembler
• Metagenomics
• K-mer
• Sequence assembly
• RNA-Seq

Memory Efficient Minimum Substring Partitioning Yang Li, Pegah Kamousi, Fangqiu Han, Shengqi Yang, Xifeng Yan, Subhash Suri University of California, Santa Barbara {yangli, pegah, fhan, sqyang, xyan, suri}@cs.ucsb.edu A

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• Mathematics
• Academia
• Discrete mathematics
• Combinatorics
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• Formal languages
• K-mer
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• Comparison of programming languages
• Velvet assembler

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Please note that this electronic prepublication galley may contain typographical errors and may be missing artwork, such as charts, photographs, etc. Pagination in this version will differ from the published version. Mer

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• Thunnus
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How to apply de Bruijn graphs to genome assembly

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• Graph theory
• Mathematics
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• NP-complete problems
• Computational biology
• DNA sequencing
• K-mer
• Velvet assembler
• Eulerian path
• Hamiltonian path
• Degree
• Seven Bridges of Knigsberg

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