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Date: 2007-07-18 06:13:18 Bioinformatics Java platform BioJava Biological databases Wellcome Trust Ensembl Java Hackathon JUnit Computing Software Cross-platform software		BioJava http://www.biojava.org/ BOSC 2007, Vienna Richard Holland Add to Reading List Source URL: www.biojava.org Download Document from Source Website File Size: 242,20 KB Share Document on Facebook

	Exercise - Orthologues, paralogues and gene trees for the sup45 gene in yeast. a) How many orthologues are predicted for this gene in Ensembl Fungi? Let’s have a closer look at the orthologues in Schizosacchmomycetale DocID: 1vkaV - View Document
	Exercise – Ensembl Fungi: export sequences in FASTA format Retrieve the fasta sequences of all genes in Schistosoma mansoni located on chromosome 5 that are protein coding and contain transmembrane domains only. Do a DocID: 1vbN9 - View Document
	The 1000 Genomes Pilot Browser Tutorial _http://1000genomes.org/_ Updated onTo facilitate immediate analysis of the 1000 Genomes data by the whole scientific community, the Ensembl genome browser was adopte DocID: 1v2YJ - View Document
	Exercise – Ensembl Fungi: variation data in the S. cerevisiae mitochondrial genome Retrieve the variation ID, chromosome name, position in bp and alleles for all sequence variants in the mtDNA. Export the results as a DocID: 1upYE - View Document
	Exercise – Plasmodium falciparum and SNPs Go to Ensembl Protists and search for glucose-6-phosphate 1-dehydrogenase. Filter the results for Plasmodium falciparum only. a) How is this gene named in Ensembl Protists? DocID: 1un8t - View Document