Exercise - Orthologues, paralogues and gene trees for the sup45 gene in yeast. a) How many orthologues are predicted for this gene in Ensembl Fungi? Let’s have a closer look at the orthologues in Schizosacchmomycetale

Source URL: ftp.ebi.ac.uk

Exercise – Ensembl Fungi: export sequences in FASTA format Retrieve the fasta sequences of all genes in Schistosoma mansoni located on chromosome 5 that are protein coding and contain transmembrane domains only. Do a

Source URL: ftp.ebi.ac.uk

The 1000 Genomes Pilot Browser Tutorial _http://1000genomes.org/_ Updated onTo facilitate immediate analysis of the 1000 Genomes data by the whole scientific community, the Ensembl genome browser was adopte

Source URL: www.internationalgenome.org

Exercise – Ensembl Fungi: variation data in the S. cerevisiae mitochondrial genome Retrieve the variation ID, chromosome name, position in bp and alleles for all sequence variants in the mtDNA. Export the results as a

Source URL: ftp.ebi.ac.uk

Exercise – Plasmodium falciparum and SNPs Go to Ensembl Protists and search for glucose-6-phosphate 1-dehydrogenase. Filter the results for Plasmodium falciparum only. a) How is this gene named in Ensembl Protists?

Source URL: ftp.ebi.ac.uk

ENSEMBL PLANTS: BROWSER WALKTHROUGH The Arabidopsis floral homeotic gene APETALA1 (AP1) encodes a putative transcription factor that acts locally to specify the identity of the floral meristem and to determine sepal and

Source URL: ftp.ebi.ac.uk

ENSEMBL FUNGI: BROWSER WALKTHROUGH We will explore the sir2 gene, which seems to play a role in longevity determination. Deletion of sir2 shortens replicative life span, whereas overexpression increases replicative life

Source URL: ftp.ebi.ac.uk

warnow-3problems-2015-final.pdf

Source URL: tandy.cs.illinois.edu

• Bioinformatics
• Biology
• Metagenomics
• Phylogenomics
• Phylogenetics
• Ensembl
• Gene

Sharing Data from Large-scale Biological Research Projects: A System of Tripartite Responsibility Report of a meeting organized by the Wellcome Trust and held on 14–15 January 2003 at Fort Lauderdale, USA.

Source URL: parasite.wormbase.org

• Biology
• Genetics
• Bioinformatics
• Wellcome Trust
• Biological databases
• Open access
• Biotechnology
• Open data
• Fort Lauderdale Agreement
• Bermuda Principles
• Whole genome sequencing
• Ensembl

Microsoft PowerPoint - Hedeler_SSDBM08.ppt

Source URL: i.cs.hku.hk

• Biological databases
• Bioinformatics
• Wellcome Trust
• Genomics
• Ensembl
• GenBank
• University of Manchester Institute of Science and Technology
• Genome browser