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Sequence alignment / Multiple sequence alignment / BLAST / Sequence analysis / Viterbi algorithm / Hidden Markov model / Pfam / SUPERFAMILY / Homology / Bioinformatics / Science / HMMER


Johnson et al. BMC Bioinformatics 2010, 11:431 http://www.biomedcentral.com RESEARCH ARTICLE Open Access
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Document Date: 2014-09-02 13:41:20


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City

Ashburn / St. Louis / /

Company

Murzin AG / GE / Pearson / BioMed Central Ltd. / HMMERHEAD Search Times / Intel / Creative Commons / /

Country

United States / Israel / /

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Event

Man-Made Disaster / /

Facility

Howard Hughes Medical Institute / Farm Research Campus / Hebrew University of Jerusalem / Washington University / Leibniz Center / SQUID library / University School / /

IndustryTerm

model search method / iterative search program target2k / search times / protein database search programs / main scoring algorithms / specified full scoring algorithm / iterative search procedure / search approaches / search procedure / database search / software package / sequence-based homology detection algorithms / search heuristics / search methods / search method / model protocols / model search strategies / search heuristic / local alignment search tool / average search time / search queries / default search performance / iterative search method / mean search time / search time / developed search heuristic / /

Organization

National Institute of Health / Washington University in St. Louis / Eta / Hebrew University of Jerusalem / Jerusalem / Washington University School of Medicine / Department of Immunology and Pathology / Sudarsky Center for Computational Biology / Israeli Ministry of Science / Leibniz Center for Research / Howard Hughes Medical Institute / /

Person

Alvin Goldfarb / Matan Ninio / Eddy SR / /

Position

Default Forward HMMERHEAD Forward / using HMMERHEAD Forward / Walker / HMMERHEAD Forward / MP / NRDB90 using Forward / Db Reduction Fold Speedup Local Forward / author / Forward / left end / /

Product

Astral Compendium / /

ProgrammingLanguage

Perl / J / /

ProvinceOrState

Virginia / Missouri / /

Technology

RAM / Bioinformatics / 1 HMMERHEAD Speed Improvement Model Algorithm / scoring algorithm / Perl / HMMERHEAD algorithm / main scoring algorithms / scoring algorithms / sequence-based homology detection algorithms / iterated hidden Markov model protocols / JackHMMER algorithm / http / Gainestown X5560 processor / profile-HMM scoring algorithms / /

URL

http /

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