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Stochastic simulation / Gillespie algorithm / Population genetics / Mutation / Quasispecies model / Fitness landscape / Viral quasispecies / Evolution / Natural selection / Evolutionary biology / Biology / Philosophy of biology


BIOINFORMATICS Vol. 00 no[removed]Pages 1–9 Fast stochastic algorithm for simulating evolutionary
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Document Date: 2013-10-11 13:34:11

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City

New York / Delaney / San Diego / Elowitz / Wiley / /

Company

Cambridge University Press / Ostroff N. A. / Clarendon Press / Teukolsky S. A. / Oxford University Press / Cox / Novozhilov A. S. / /

Country

United States / /

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Facility

BioCircuits Institute / USA BioCircuits Institute / University of California / /

IndustryTerm

chemical systems / linear law / leap algorithm / chemical reaction networks / dilution protocol / reaction networks / approximate hybrid algorithm / stochastic reaction systems / Biological applications / straightforward stochastic simulation algorithm / rate law / complicated systems / stiff stochastic chemical kinetics / leap algorithms / stochastic algorithm / approximate algorithm / function solution / coupled chemical-reactions / pure birth-death systems / metabolic networks / stochastic chemical systems / slow-scale stochastic simulation algorithm / /

Organization

San Diego Center for Systems Biology / USA BioCircuits Institute / Cambridge University / National Academy of Sciences / Department of Bioengineering / Division of Biological Sciences / Oxford University / University of California / San Diego / /

Person

Suppose / Karev / Define Pn / /

Position

Editor / Prime Minister / classical Wright-Fisher / Linear fitness model / single-species birth/death/mutation model / General / Corresponding author / Cao / Fisher / G. P. / /

ProgrammingLanguage

C / L / /

ProvinceOrState

New York / N. F. / M. B. / California / /

PublishedMedium

Journal Of Molecular Biology / Journal Of Chemical Physics / Physical Review Letters / Journal Of Physical Chemistry A / Proceedings of the National Academy of Sciences / Journal Of Physics A / Journal Of Theoretical Biology / Journal of Computational Physics / Molecular Systems Biology / /

Technology

BIOINFORMATICS / following algorithm / 30 BNB algorithm / approximate hybrid algorithm / Gillespie algorithm / approximate algorithm / metabolic networks / direct SSA algorithm / 2 ALGORITHM The BNB algorithm / using direct Gillespie algorithm / approximate BNB algorithm / approximate algorithm BNB algorithm / straightforward stochastic simulation algorithm / dilution protocol / leap algorithms / 7 Mather et al This algorithm / proposed algorithm / gene expression / leap algorithm / mutation BNB algorithm / BNB algorithm / Molecular evolution / Simulation / genotype / approximate BNB algorithms / slow-scale stochastic simulation algorithm / /

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