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Codon Adaptation Index
Results: 10

#	Item
1	A Dissection of Volatility in Yeast Nina Stoletzki,* John Welch, Joachim Hermisson,* and Adam Eyre-Walker Section of Evolutionary Biology, Department Biology II, Ludwig-Maximilians-University Munich, Planegg-Martins Add to Reading List Source URL: www.mabs.at Language: English* - Date: 2007-11-28 06:44:21 Biology Biochemistry Molecular biology Gene expression Protein biosynthesis Mutation Molecular genetics Codon usage bias Codon Adaptation Index Genetic code Synonymous substitution Ka/Ks ratio
2	Vol. 19 no, pages 2005–2015 DOI: bioinformatics/btg272 BIOINFORMATICS Codon adaptation index as a measure of Add to Reading List Source URL: www.ihes.fr Language: English - Date: 2009-09-10 07:49:59 Gene expression Protein biosynthesis Molecular genetics Genetics Codon usage bias Codon Adaptation Index Genetic code Gene Stop codon Biology Biochemistry Molecular biology
3	Codon Bias Signatures, Organization of Microorganisms in Codon Space, and Lifestyle A. Carbone,* F. Ke´pe`s, and A. Zinovyevà Ge´nomique Analytique, Universite´ Pierre et Marie Curie, INSERM U511, 91, Bd de l’Ho Add to Reading List Source URL: www.ihes.fr Language: English* - Date: 2009-09-10 07:50:00 Protein biosynthesis Genetics DNA Codon usage bias Codon Adaptation Index Genetic code Stop codon GC-content Gene Biology Molecular biology Gene expression
4	RNA levels were determined using DNASeq and RNASeq. Protein levels were determined by FlowSeq; [removed]%) constructs were within the quantitative range of our assay (R2 = 0.955, p < 2×10−16; fig. S5). We normalized Add to Reading List Source URL: arep.med.harvard.edu Language: English - Date: 2013-10-21 04:48:01 Gene expression Molecular biology Molecular genetics Genetics Codon usage bias Genetic code Translation Codon Adaptation Index Messenger RNA Biology Biochemistry Protein biosynthesis
5	GROWTHPRED Main references: The background on the method can be found in: Vieira-Silva S, Rocha EPCThe Systemic Imprint of Growth and its Uses in Ecological (Meta)genomics. PLoS genetics doi: journal.pgen Add to Reading List Source URL: bioweb2.pasteur.fr Language: English - Date: 2014-06-27 09:41:54 Gene expression Protein biosynthesis Molecular genetics DNA Codon usage bias Genetic code Codon Adaptation Index Translation Effective number of codons Biology Biochemistry Molecular biology
6	Design Parameters to Control Synthetic Gene Expression in Escherichia coli Mark Welch1, Sridhar Govindarajan1, Jon E. Ness1, Alan Villalobos1, Austin Gurney2, Jeremy Minshull1, Claes Gustafsson1 1 DNA2.0, Menlo Park, Ca Add to Reading List Source URL: mpec.ucsf.edu Language: English* - Date: 2011-11-09 21:09:34 Protein biosynthesis Molecular biology Molecular genetics Codon usage bias Codon Adaptation Index Genetic code Transfer RNA Start codon Translation Biology Biochemistry Gene expression
7	Synonymous but not the same: the causes and consequences of codon bias Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English - Date: 2010-12-20 09:24:08 Protein biosynthesis Molecular biology Molecular genetics RNA Codon usage bias Codon Adaptation Index Genetic code Translation Start codon Biology Biochemistry Gene expression
8	brief communications arising Evolutionary genomics Codon bias and selection on single genomes Arising from: J. B. Plotkin, J. Dushoff & H. B. Fraser Nature 428, 942–[removed]) Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English - Date: 2005-01-19 15:57:40 Gene expression Protein biosynthesis Genetics Mutation Codon usage bias Codon Adaptation Index Genetic code Ka/Ks ratio Synonymous substitution Biology Biochemistry Molecular biology
9	Coding-Sequence Determinants of Gene Expression in Escherichia coli Grzegorz Kudla, et al. Science 324, [removed]); DOI: [removed]science[removed]The following resources related to this article are available online at Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English - Date: 2009-05-06 16:26:18 Gene expression Protein biosynthesis Molecular genetics Genetics Codon usage bias Green fluorescent protein Codon Adaptation Index Messenger RNA Translation Biology Biochemistry Molecular biology
10	Systemic remodeling of the redox regulatory network due to RNAi perturbations of glutaredoxin 1, thioredoxin 1, and glucose-6-phosphate dehydrogenase Add to Reading List Source URL: www.ncbi.nlm.nih.gov Language: English Molecular biology Protein biosynthesis Molecular genetics RNA Codon usage bias Codon Adaptation Index Artificial gene synthesis Genetic code Synonymous substitution Biology Biochemistry Gene expression