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381	Package ‘edgeRun’ September 19, 2014 Type Package Title More Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data Version 1.0.9 Add to Reading List Source URL: cran.r-project.org Language: English Bioconductor Bioinformatics Edger Debian R Software Science Application software
382	Package ‘affy’ November 24, 2014 Version 1.44.0 Title Methods for Affymetrix Oligonucleotide Arrays Author Rafael A. Irizarry , Laurent Gautier , Benjamin Milo Bolstad Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-11-28 13:20:05 Microarrays Object-oriented programming Bioconductor Object Type signature Constant Method Is functions Software Computing Bioinformatics
383	Preface T his book aims to provide a broad introduction to the R statistical computing environment (R Development Core Team, 2009a) in the context of applied regression analysis, which is typically studied by social scie Add to Reading List Source URL: socserv.socsci.mcmaster.ca Language: English - Date: 2010-11-10 12:03:21 Regression analysis R Statistical methods Non-parametric statistics SPSS Bioconductor SAS Stata STATISTICA Statistics Software Econometrics
384	Handling of data containing outliers Wolfram Stacklies and Henning Redestig CAS-MPG Partner Institute for Computational Biology (PICB) Shanghai, P.R. China and Max Planck Institute for Molecular Plant Physiology Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-10-13 20:48:32 Robust statistics Multivariate statistics Principal component analysis Singular value decomposition Outlier Statistics Algebra Data analysis
385	Package ‘rhdf5’ November 26, 2014 Type Package Title HDF5 interface to R Version[removed]Author Bernd Fischer, Gregoire Pau Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-11-27 13:20:15 Test File format Constructor Library Resource fork Computer file formats Computing Hierarchical Data Format
386	affy: Built-in Processing Methods Ben Bolstad October 13, 2014 Contents 1 Introduction Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-10-13 20:27:26 Biochemistry Gene expression Bioinformatics DNA Molecular biology Quantile normalization DNA microarray Affymetrix Quantile Microarrays Biology Chemistry
387	Imputing missing values using the pcaMethods package Wolfram Stacklies and Henning Redestig CAS-MPG Partner Institute for Computational Biology (PICB) Shanghai, P.R. China and Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-10-13 20:48:32 Principal component analysis Singular value decomposition Machine learning Imputation Missing data Cross-validation Statistics Data analysis Multivariate statistics
388	Package ‘RBGL’ November 26, 2014 Version 1.42.0 Title An interface to the BOOST graph library Author Vince Carey , Li Long , R. Gentleman Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-11-27 13:20:14 Graph connectivity Depth-first search Centrality Planar graph Betweenness centrality Connected component Tree Biconnected graph Graph Graph theory Mathematics Network theory
389	Package ‘OmicCircos’ November 25, 2014 Version 1.4.0 Date 2013-05-28 Title High-quality circular visualization of omic data Author Ying Hu Chunhua Yan Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-11-28 13:20:18 Decibel Telecommunications Logging while drilling Heat map Science Technology Biology Bioinformatics Acoustics
390	The pcaMethods Package Wolfram Stacklies and Henning Redestig CAS-MPG Partner Institute for Computational Biology (PICB) Shanghai, P.R. China and Max Planck Institute for Molecular Plant Physiology Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-10-13 20:48:32 Multivariate statistics Singular value decomposition Regression analysis Missing data Principal component analysis Least squares Linear regression Expectation–maximization algorithm Imputation Statistics Algebra Data analysis

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