T-Coffee reference manual

First Page		Document Content
Date: 2014-04-16 10:37:36 Software T-Coffee Sequence alignment Clustal Multiple sequence alignment FASTA BLAST STING Command-line interface Computational phylogenetics Bioinformatics Science		T-Coffee reference manual Add to Reading List Source URL: www.tcoffee.org Download Document from Source Website File Size: 643,00 KB Share Document on Facebook

	Multiple sequence alignment with user-defined constraints DocID: 1vdcP - View Document
	Today’s Lecture • Multiple sequence alignment • Improved scoring of pairwise alignments – Affine gap penalties – Profiles DocID: 1uPzd - View Document
	Today’s Lecture • Finding multiple high-scoring segments • “D-segments” – relationship to 2-state HMMs • Sequence alignment & evolution DocID: 1uG7I - View Document
	Multiple Sequence Alignment: A Critical Comparison of Four Popular Programs Shirley Sutton, Biochemistry 218 Final Project, March 14, 2008 Introduction For both the computational biologist and the research biologist, the DocID: 1uprj - View Document
	Marina Sirota PROTEIN MULTIPLE ALIGNMENT MOTIVATION: To study evolution on the genetic level across a wide range of organisms, biologists need accurate tools for multiple sequence alignment of protein families. Given a DocID: 1u67n - View Document