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Title of article: Scoring functions for ab initio protein structure prediction Suggested running head: Scoring functions for ab initio methods Authors: Enoch S. Huang, Ram Samudrala, Britt H. Park Department of Structura

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• Chemistry
• Protein methods
• Biochemistry
• Threading
• Protein folding
• Homology modeling
• Sequence alignment
• Protein
• LSm
• Biology
• Bioinformatics
• Protein structure

L6705 Advani Usha , B-68, University Marg,Bapu Nagar,Jaipur,,RAJASTHAN L3563

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TECHNICAL COMMENT Comment on ‘‘Evidence for Positive Epistasis in HIV-1’’ Kai Wang, John E. Mittler, Ram Samudrala* Bonhoeffer et al. (Reports, 26 November 2004, ppresented evidence for positive epistasis

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Protein Science ~2000!, 9:1399–1401. Cambridge University Press. Printed in the USA. Copyright © 2000 The Protein Society FOR THE RECORD Decoys ‘R’ Us: A database of incorrect conformations

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BMC Structural Biology BioMed Central Open Access

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• Bioinformatics
• Protein methods
• Stereochemistry
• Root-mean-square deviation
• Decoy
• Protein structure prediction
• Conformational isomerism
• Chemistry
• Statistics
• Protein structure

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Protein Engineering vol.11 no.11 pp.991–997, 1998 Determinants of side chain conformational preferences in protein structures Ram Samudrala1,2 and John Moult1,3

Source URL: www.ram.org

• Bioinformatics
• Protein methods
• Stereochemistry
• Conformational isomerism
• Homology modeling
• Beta sheet
• Amino acid
• Alpha helix
• STING
• Chemistry
• Protein structure
• Biology

Antiviral Therapy 10:157–166 Prediction of HIV-1 protease inhibitor resistance using a protein–inhibitor flexible docking approach Ekachai Jenwitheesuk and Ram Samudrala* Computational Genomics Group, Department of

Source URL: www.ram.org

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