361 Hidden Markov models

First Page		Document Content
Date: 2002-10-30 23:50:05 Hidden Markov model Sequence alignment Multiple sequence alignment Sequence analysis Threading Protein secondary structure Markov chain Pfam Protein structure prediction Bioinformatics Science Biology		361 Hidden Markov models Add to Reading List Source URL: bioinfo.mbb.yale.edu Download Document from Source Website File Size: 471,17 KB Share Document on Facebook

	Multiple sequence alignment with user-defined constraints DocID: 1vdcP - View Document
	Today’s Lecture • Multiple sequence alignment • Improved scoring of pairwise alignments – Affine gap penalties – Profiles DocID: 1uPzd - View Document
	Today’s Lecture • Finding multiple high-scoring segments • “D-segments” – relationship to 2-state HMMs • Sequence alignment & evolution DocID: 1uG7I - View Document
	Multiple Sequence Alignment: A Critical Comparison of Four Popular Programs Shirley Sutton, Biochemistry 218 Final Project, March 14, 2008 Introduction For both the computational biologist and the research biologist, the DocID: 1uprj - View Document
	Marina Sirota PROTEIN MULTIPLE ALIGNMENT MOTIVATION: To study evolution on the genetic level across a wide range of organisms, biologists need accurate tools for multiple sequence alignment of protein families. Given a DocID: 1u67n - View Document