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Bioinformatics / FASTQ format / Lossless data compression / ZPAQ / PAQ / Arithmetic coding / Bzip2 / Lempel–Ziv–Markov chain algorithm / Data compression / Computing / Open formats


1 Compression of FASTQ and SAM Format Sequencing Data James K. Bonfield 1,∗ , Matthew V. Mahoney 2 1 Wellcome Trust Sanger Institute, Cambridge,
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Document Date: 2013-05-07 20:49:39


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File Size: 661,76 KB

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Berlin / Cambridge / Ligation / Sort / /

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UK 2 Dell Inc. / Cox / Intel / /

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Germany / United States / /

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Wellcome Trust Sanger Institute / /

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http /

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The second line / /

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Linux / Ubuntu / /

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Wellcome Trust Sanger Institute / Pistoia Alliance / /

Person

Matthew V. Mahoney / Eugene Shelwien / Ibrahim Numanagic / James K. Bonfield / Daniel Jones / /

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author / Rice PM / representative / /

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SRR027520 1 / SRR065390 1 / Bowtie2 / /

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RC / C / ML / T / /

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Manitoba / /

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PLoS ONE / Genome Research / Nucleic Acids Research / /

Technology

alpha / Genomics / virtual machine / bioinformatics / disk technology / Linux / random access / context mixing algorithm / human genome / alignment algorithm / purpose compression algorithms / ASCII / DNA sequencing / http / Lempel Ziv style compression algorithm / sequence assembly algorithm / boosting sequence compression algorithms / /

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