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431	Package ‘GEOquery’ October 5, 2014 Type Package Title Get data from NCBI Gene Expression Omnibus (GEO) Version[removed]Date[removed] Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-10-07 12:15:13 ISO standards GDSII Parchive Computer file C Sharp Resource fork Computing Computer programming Software engineering
432	How To use the graph package April 11, [removed]Introduction Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-04-12 01:10:58 Network theory Matroid theory Graph Line graph Adjacency matrix Depth-first search Shortest path problem Directed graph Random graph Graph theory Mathematics Algebraic graph theory
433	Using the GEOquery package Sean Davis‡∗ July 10, 2014 ‡ Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-07-10 22:24:36 Kidney Kidney cancer Renal cell carcinoma Carcinoma
434	1 Introduction The purpose of this document is to describe the implementation the classes used to represent graphs in the graph package and to discuss design issues for future development. Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-04-12 01:10:58 Adjacency matrix Bipartite graph Adjacency list Directed graph Loop Connectivity Signed graph Edge coloring Graph theory Graph Multigraph
435	graphBAM and MultiGraph classes. N. Gopalakrishnan April 11, [removed] Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-04-12 01:10:58 DEX Graph Adjacency matrix Connectivity Loop Directed graph Edge coloring Graph theory Mathematics Multigraph
436	snpMatrix vignette Example of genome-wide association testing David Clayton and Chris Wallace May 9, 2014 The snpMatrix package Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-05-10 02:11:55 Classical genetics DNA Biological databases International HapMap Project Genome-wide association study Single-nucleotide polymorphism Summary statistic Minor allele frequency Genetic association Genetics Biology Population genetics
437	Package ‘chopsticks’ October 4, 2014 Title The snp.matrix and X.snp.matrix classes Version 1.28.2 Date 2014-05-09 Author Hin-Tak Leung Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-10-07 12:15:09 Population genetics DNA Molecular biology Biological databases International HapMap Project Single-nucleotide polymorphism Genome-wide association study Haploview Genetic association Biology Genetics Philosophy of biology
438	Attributes for Graph Objects Seth Falcon April 11, 2014 1 Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-04-12 01:10:58 Parsing Attribute Statistic G1 Software engineering Computer programming Implicit k-d tree Computing Attribute grammar Compiler construction
439	R packages: Vignettes prior to R[removed]Henrik Bengtsson June 07, 2014 Introduction When building an R package, Sweave/LaTeX vignettes are recognized by R, compiled into Add to Reading List Source URL: cran.r-project.org Language: English - Date: 2014-07-02 10:15:02 Compiling tools Make Vignette Bioconductor Dpkg Directory Software Application software Build automation
440	Package ‘BiocInstaller’ September 30, 2014 Title Install/Update Bioconductor and CRAN Packages Description Installs/updates Bioconductor and CRAN packages Version[removed]Author Dan Tenenbaum and Biocore Team Add to Reading List Source URL: www.bioconductor.org Language: English - Date: 2014-10-01 12:15:07 R Debian Package Software repository Software Bioconductor Bioinformatics

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